; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001247 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001247
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr4:27703663..27707013
RNA-Seq ExpressionLag0001247
SyntenyLag0001247
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]6.9e-10132.42Show/hide
Query:  VRQWSENVQQIHGDS---LVENVISQFKDVSFPESQLEAVKQAWEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTI
        V QWSE+ Q   G S    +E  + +   + F  + LE +K  WE L  +++AKF   YG +  L+Y  +N S L+AL   WDP  +CFTF + D+TPTI
Subjt:  VRQWSENVQQIHGDS---LVENVISQFKDVSFPESQLEAVKQAWEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTI

Query:  EEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIEKQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF------------------
        EEYQ+L+ +P     + Y Y ++LT++R+LS  +G I  S+++KQ+K K    C+P++Y++ L +      K L+L+ALCI+                  
Subjt:  EEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIEKQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF------------------

Query:  ---------------------------------------MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSA----------
                                               MLF +++        F  P+IKF+S WNK RN I EF  + W    PE  A          
Subjt:  ---------------------------------------MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSA----------

Query:  --------------------WE-------------------AFFSELKSGQFHDDTTEAYKTWHANRAKTVLVSPKMKTKIKLNAKVKQGLLRNVEL---
                            WE                    F  ++KS +  + TTE Y  W A+R   + ++P           + + L+ N+EL   
Subjt:  --------------------WE-------------------AFFSELKSGQFHDDTTEAYKTWHANRAKTVLVSPKMKTKIKLNAKVKQGLLRNVEL---

Query:  ---EKELNRLKGS----VSKQEQLEKEISALDTEARDLNRRMHRLRRDN-------EVSQATLKSRNDQVLKQQSEIASLHELMKELED----CISLRN-
           EKEL RL+       ++ E+L +E+     +A +  R +   +R         EV Q +++    Q+++ +S+   L + +   E     C   R  
Subjt:  ---EKELNRLKGS----VSKQEQLEKEISALDTEARDLNRRMHRLRRDN-------EVSQATLKSRNDQVLKQQSEIASLHELMKELED----CISLRN-

Query:  ------QTITEVEEKNGTL----DDLQLTLKIREDQLGDLINDNKGLRE--------SVQSLNVRLGKYQDA-TDRLMKDYTYLKEQYDRLSDDFGFARQ
              Q I + +E +       D+ +   +  +D +G +    + LR+        SVQ+  +R G      TD+ +  +  +  Q   L  D    + 
Subjt:  ------QTITEVEEKNGTL----DDLQLTLKIREDQLGDLINDNKGLRE--------SVQSLNVRLGKYQDA-TDRLMKDYTYLKEQYDRLSDDFGFARQ

Query:  NHATLRK-----RGKIIPDIAQS-----SHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIR
          A + +     RGK +   +       +  + D P      G TP+      +    +P  F      P  N P  +   E      I+   ++  +  
Subjt:  NHATLRK-----RGKIIPDIAQS-----SHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIR

Query:  KELTGDATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNID
         E  G   +L  + + +      + +FEKY+G SCPK+HL+MYCRKM+AY  +DKLLIHCFQDSL+ PASRWYMQLD + +  WK+LADSFLKQYK+NID
Subjt:  KELTGDATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNID

Query:  MAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        MAPDRLDLQRMEKK+ E+FKEYAQRWR+ AAQVQPPL DKEL+ MFINTL++P+YD+M+GSASTNFSD++TIGERI
Subjt:  MAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]1.4e-11433.6Show/hide
Query:  WEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTIEEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIE
        WE LT  R+  F+ KYG++A+LMY+ VNY  L+A+I   DPAY CFTFGS D+ PTIEEYQ++L MP +     Y ++ + T KR LS  L  +  ++I+
Subjt:  WEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTIEEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIE

Query:  KQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF-------------------------------------------------------------
        K +K KG    +P DY++ + Q + +EDK LTLLALCI+                                                             
Subjt:  KQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF-------------------------------------------------------------

Query:  ----MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSAWEAFFSELKS-------------------GQFH------------
            +L+ +++       EF+CP + FSS WN +RN ISEF  + W  + P + AW +FF++L S                   G FH            
Subjt:  ----MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSAWEAFFSELKS-------------------GQFH------------

Query:  ------------------------------DDTTEAYKTWHANRAKTVL-------------------------VSPKMKTKI------KLNAKVKQGLL
                                      +  T  Y+ W ANR K ++                         +  + K ++      KL  +  Q + 
Subjt:  ------------------------------DDTTEAYKTWHANRAKTVL-------------------------VSPKMKTKI------KLNAKVKQGLL

Query:  RNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATL--------KSRNDQVLKQQSEIASLHELMKELEDCISLRNQTITEV
            L+ EL + K  +  Q++LE ++  LD E R +N+    ++ +    QAT+        +S   ++LK  ++   LH  +  L++     ++ IT+ 
Subjt:  RNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATL--------KSRNDQVLKQQSEIASLHELMKELEDCISLRNQTITEV

Query:  EEKNGTLDDLQLTL---------KIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATD-RLMKDYTYLKEQYDRLSDDFGFARQNHATLRK--------
         E   T D +Q+ +         ++  +++   I   + + +         GKY   T  R   +  Y  +  +    D    RQ    L +        
Subjt:  EEKNGTLDDLQLTL---------KIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATD-RLMKDYTYLKEQYDRLSDDFGFARQNHATLRK--------

Query:  ----RGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIRKELTGDATKLCLV
            +GK   D  QSS+ + D        G TP YH   N+P  +     F    + + ++    +  E        +  +++ ++   +  DAT+LCLV
Subjt:  ----RGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIRKELTGDATKLCLV

Query:  PDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK
        P +I+P KFKVPEF KYDG++CP++HLIMYCRKMA ++ NDKLL+HCFQDSL  PASRWY+QLD+ HI  WK+LAD+FLKQYK NIDMAPDRLDLQRMEK
Subjt:  PDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK

Query:  KSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        KS+ESFKEYAQRWRD AA+VQPPL DKE+++MF+NTL++PFY++MIG+ASTNFSDI+ IGERI
Subjt:  KSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.4e-8567.32Show/hide
Query:  YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPTEI--------PPKVTITVPNLDDPEIRKELTG-----------DATKLCLVPDVILPPKF
        Y+PLY++PV Q+  PF K  +Q+P   +  +P    S PT +           V    P+ +  E+ KE              DA++LC V  +++PPK 
Subjt:  YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPTEI--------PPKVTITVPNLDDPEIRKELTG-----------DATKLCLVPDVILPPKF

Query:  KVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEY
        KVPEFEKY+G+SCPKNHL MYCRKMAAYVQNDKLLIHCFQDSL GPASRWYMQLDS+H+ SWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEY
Subjt:  KVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEY

Query:  AQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        AQRWRDTAAQVQPPL DKELS MFINTLK PFYD+MIGSASTNFSDIMTIGERI
Subjt:  AQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.0e-8861Show/hide
Query:  KRGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPT-----EIPPKVTIT
        ++GK   D A SS+ +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P   +  +P    S PT       P K    
Subjt:  KRGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPT-----EIPPKVTIT

Query:  VPNLDDPEIRKELTG--------------DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQL
          N    E  + L                DA++LCLV  +++PPKFKVPEFEKYDG+SCPKNHLIMYCRKM AYVQN KLLIHCFQDSL G ASRWYMQL
Subjt:  VPNLDDPEIRKELTG--------------DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQL

Query:  DSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        DS+H+ SWKNLADSFLKQYKHNIDMAPDRLDLQRMEK STESFKEYAQRWRDTAAQVQPPL DKELS MFINTLK PFYD+MIGSASTNFSDIMTIGERI
Subjt:  DSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.5e-8739.46Show/hide
Query:  KLNAKVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISLRNQTI
        KL  +  Q +     L++EL + K  +  Q++LEK +  LD E R +N+    L+ +  + QAT++S+++ +   ++      EL+ +L+  I  R   I
Subjt:  KLNAKVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISLRNQTI

Query:  TEVEEKNGTLDDLQLTLKIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATDRLMKDYTYLKEQYDRLSDDFGFARQNHATLRKR--------------
         ++E  N +L     +L ++   + +   D K L+    SL+ +L  +Q++++R++++Y  LK  Y ++  D+   R++  TL +R              
Subjt:  TEVEEKNGTLDDLQLTLKIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATDRLMKDYTYLKEQYDRLSDDFGFARQNHATLRKR--------------

Query:  -----------------------------------------GKIIPDIAQSSHTMNDPPIRQSTEGTTPKY---------------HPLYNIPVEQHPFP
                                                 GK++ + AQSS+ + D        G TP++               +PL+++P    P P
Subjt:  -----------------------------------------GKIIPDIAQSSHTMNDPPIRQSTEGTTPKY---------------HPLYNIPVEQHPFP

Query:  FFKNEQVPVHNQP-GFSLPTEIPPKVTITVPNLDDPEIRKELTG--DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIH
          +  +     Q  G +  T    K+ +    L   E   ++ G  DAT+LCLVP +I+P KFKVP F+KYDG+SCP++HLIMYCRKMAA++ NDKLLIH
Subjt:  FFKNEQVPVHNQP-GFSLPTEIPPKVTITVPNLDDPEIRKELTG--DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIH

Query:  CFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMI
        CFQDSL GPA+RWY+QLD+ HI  WK+LAD+FLKQYKHNIDMAPDRLDLQRMEKKS+ESFKEYAQRWRD AA+VQPPL DKE++ MF+NTL++PFYD+MI
Subjt:  CFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMI

Query:  GSASTNFSDIMTIGERI
        G+A+TNFSDI+ IGERI
Subjt:  GSASTNFSDIMTIGERI

TrEMBL top hitse value%identityAlignment
A0A5A7SUT0 Reverse transcriptase3.4e-10132.42Show/hide
Query:  VRQWSENVQQIHGDS---LVENVISQFKDVSFPESQLEAVKQAWEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTI
        V QWSE+ Q   G S    +E  + +   + F  + LE +K  WE L  +++AKF   YG +  L+Y  +N S L+AL   WDP  +CFTF + D+TPTI
Subjt:  VRQWSENVQQIHGDS---LVENVISQFKDVSFPESQLEAVKQAWEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTI

Query:  EEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIEKQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF------------------
        EEYQ+L+ +P     + Y Y ++LT++R+LS  +G I  S+++KQ+K K    C+P++Y++ L +      K L+L+ALCI+                  
Subjt:  EEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIEKQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF------------------

Query:  ---------------------------------------MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSA----------
                                               MLF +++        F  P+IKF+S WNK RN I EF  + W    PE  A          
Subjt:  ---------------------------------------MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSA----------

Query:  --------------------WE-------------------AFFSELKSGQFHDDTTEAYKTWHANRAKTVLVSPKMKTKIKLNAKVKQGLLRNVEL---
                            WE                    F  ++KS +  + TTE Y  W A+R   + ++P           + + L+ N+EL   
Subjt:  --------------------WE-------------------AFFSELKSGQFHDDTTEAYKTWHANRAKTVLVSPKMKTKIKLNAKVKQGLLRNVEL---

Query:  ---EKELNRLKGS----VSKQEQLEKEISALDTEARDLNRRMHRLRRDN-------EVSQATLKSRNDQVLKQQSEIASLHELMKELED----CISLRN-
           EKEL RL+       ++ E+L +E+     +A +  R +   +R         EV Q +++    Q+++ +S+   L + +   E     C   R  
Subjt:  ---EKELNRLKGS----VSKQEQLEKEISALDTEARDLNRRMHRLRRDN-------EVSQATLKSRNDQVLKQQSEIASLHELMKELED----CISLRN-

Query:  ------QTITEVEEKNGTL----DDLQLTLKIREDQLGDLINDNKGLRE--------SVQSLNVRLGKYQDA-TDRLMKDYTYLKEQYDRLSDDFGFARQ
              Q I + +E +       D+ +   +  +D +G +    + LR+        SVQ+  +R G      TD+ +  +  +  Q   L  D    + 
Subjt:  ------QTITEVEEKNGTL----DDLQLTLKIREDQLGDLINDNKGLRE--------SVQSLNVRLGKYQDA-TDRLMKDYTYLKEQYDRLSDDFGFARQ

Query:  NHATLRK-----RGKIIPDIAQS-----SHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIR
          A + +     RGK +   +       +  + D P      G TP+      +    +P  F      P  N P  +   E      I+   ++  +  
Subjt:  NHATLRK-----RGKIIPDIAQS-----SHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIR

Query:  KELTGDATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNID
         E  G   +L  + + +      + +FEKY+G SCPK+HL+MYCRKM+AY  +DKLLIHCFQDSL+ PASRWYMQLD + +  WK+LADSFLKQYK+NID
Subjt:  KELTGDATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNID

Query:  MAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        MAPDRLDLQRMEKK+ E+FKEYAQRWR+ AAQVQPPL DKEL+ MFINTL++P+YD+M+GSASTNFSD++TIGERI
Subjt:  MAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

A0A5A7T1W2 Retrotrans_gag domain-containing protein7.0e-11533.6Show/hide
Query:  WEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTIEEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIE
        WE LT  R+  F+ KYG++A+LMY+ VNY  L+A+I   DPAY CFTFGS D+ PTIEEYQ++L MP +     Y ++ + T KR LS  L  +  ++I+
Subjt:  WEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTIEEYQSLLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIE

Query:  KQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF-------------------------------------------------------------
        K +K KG    +P DY++ + Q + +EDK LTLLALCI+                                                             
Subjt:  KQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIF-------------------------------------------------------------

Query:  ----MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSAWEAFFSELKS-------------------GQFH------------
            +L+ +++       EF+CP + FSS WN +RN ISEF  + W  + P + AW +FF++L S                   G FH            
Subjt:  ----MLFCFLN-----VTEFKCPEIKFSSSWNKLRNPISEFVQSGWSSSSPERSAWEAFFSELKS-------------------GQFH------------

Query:  ------------------------------DDTTEAYKTWHANRAKTVL-------------------------VSPKMKTKI------KLNAKVKQGLL
                                      +  T  Y+ W ANR K ++                         +  + K ++      KL  +  Q + 
Subjt:  ------------------------------DDTTEAYKTWHANRAKTVL-------------------------VSPKMKTKI------KLNAKVKQGLL

Query:  RNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATL--------KSRNDQVLKQQSEIASLHELMKELEDCISLRNQTITEV
            L+ EL + K  +  Q++LE ++  LD E R +N+    ++ +    QAT+        +S   ++LK  ++   LH  +  L++     ++ IT+ 
Subjt:  RNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLRRDNEVSQATL--------KSRNDQVLKQQSEIASLHELMKELEDCISLRNQTITEV

Query:  EEKNGTLDDLQLTL---------KIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATD-RLMKDYTYLKEQYDRLSDDFGFARQNHATLRK--------
         E   T D +Q+ +         ++  +++   I   + + +         GKY   T  R   +  Y  +  +    D    RQ    L +        
Subjt:  EEKNGTLDDLQLTL---------KIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATD-RLMKDYTYLKEQYDRLSDDFGFARQNHATLRK--------

Query:  ----RGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIRKELTGDATKLCLV
            +GK   D  QSS+ + D        G TP YH   N+P  +     F    + + ++    +  E        +  +++ ++   +  DAT+LCLV
Subjt:  ----RGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIRKELTGDATKLCLV

Query:  PDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK
        P +I+P KFKVPEF KYDG++CP++HLIMYCRKMA ++ NDKLL+HCFQDSL  PASRWY+QLD+ HI  WK+LAD+FLKQYK NIDMAPDRLDLQRMEK
Subjt:  PDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK

Query:  KSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        KS+ESFKEYAQRWRD AA+VQPPL DKE+++MF+NTL++PFY++MIG+ASTNFSDI+ IGERI
Subjt:  KSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

A0A6J1D099 Ribonuclease H1.2e-8567.32Show/hide
Query:  YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPTEI--------PPKVTITVPNLDDPEIRKELTG-----------DATKLCLVPDVILPPKF
        Y+PLY++PV Q+  PF K  +Q+P   +  +P    S PT +           V    P+ +  E+ KE              DA++LC V  +++PPK 
Subjt:  YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPTEI--------PPKVTITVPNLDDPEIRKELTG-----------DATKLCLVPDVILPPKF

Query:  KVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEY
        KVPEFEKY+G+SCPKNHL MYCRKMAAYVQNDKLLIHCFQDSL GPASRWYMQLDS+H+ SWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEY
Subjt:  KVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEY

Query:  AQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        AQRWRDTAAQVQPPL DKELS MFINTLK PFYD+MIGSASTNFSDIMTIGERI
Subjt:  AQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

A0A6J1DZ90 Ribonuclease H1.5e-8861Show/hide
Query:  KRGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPT-----EIPPKVTIT
        ++GK   D A SS+ +++            PP+R   EG  P+   Y+PLY++P+ Q+P  F K  +Q+P   +  +P    S PT       P K    
Subjt:  KRGKIIPDIAQSSHTMND------------PPIRQSTEGTTPK---YHPLYNIPVEQHPFPFFKN-EQVP---VHNQPG--FSLPT-----EIPPKVTIT

Query:  VPNLDDPEIRKELTG--------------DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQL
          N    E  + L                DA++LCLV  +++PPKFKVPEFEKYDG+SCPKNHLIMYCRKM AYVQN KLLIHCFQDSL G ASRWYMQL
Subjt:  VPNLDDPEIRKELTG--------------DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQL

Query:  DSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        DS+H+ SWKNLADSFLKQYKHNIDMAPDRLDLQRMEK STESFKEYAQRWRDTAAQVQPPL DKELS MFINTLK PFYD+MIGSASTNFSDIMTIGERI
Subjt:  DSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

A0A6J1E2J7 Ribonuclease H3.4e-8589.47Show/hide
Query:  DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDR
        DA++LCLV  +++PPKFKVPEFEKYDG+SCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSL GPASRWYMQLDS+++ SWKNLADSFLKQYKHNIDMAPDR
Subjt:  DATKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDR

Query:  LDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI
        LDLQRMEKKSTESFKEYAQRWRDTAAQVQPPL DKELS MFINTLK PFYD+MIG+ASTNFSDIMTIGERI
Subjt:  LDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATAGAAGATCAAGCAACAGTACGTCAATGGTCAGAAAATGTACAACAAATCCACGGAGATTCTTTAGTAGAAAATGTTATTTCTCAATTTAAGGATGTCAGTTT
TCCAGAAAGTCAATTAGAAGCAGTGAAACAGGCTTGGGAAAAATTAACTGTAGATAGGAAGGCTAAATTTACAAGCAAATATGGCTATCTAGCTCAGCTCATGTATGTAC
AAGTTAATTATTCTGTATTAAAAGCTTTGATTCGACATTGGGATCCAGCCTACAGATGTTTCACATTTGGCTCAATTGACATGACTCCTACAATAGAGGAATATCAATCC
CTTCTGCATATGCCAACACGAACAGAGGTTGAAGCTTATTCTTACGATCAAGAGCTTACAATGAAAAGAGCATTATCTACTCTTTTGGGCAAGATTCGTACGAGCGACAT
TGAGAAACAAGTAAAGATAAAAGGAGAGAACACATGCCTACCCCTAGACTACATCCTTACTCTTCAACAAAAATTTGCAAATGAAGACAAGGAGTTAACTTTACTGGCAT
TGTGTATCTTTATGTTGTTTTGTTTCCTAAATGTCACCGAATTCAAATGTCCAGAGATCAAATTTTCAAGTTCCTGGAATAAGCTGCGAAATCCCATTTCAGAGTTCGTG
CAATCAGGTTGGAGTTCATCCTCCCCTGAAAGGAGCGCTTGGGAAGCCTTTTTCTCCGAACTAAAGAGTGGTCAGTTTCATGATGATACCACAGAGGCGTACAAAACATG
GCATGCGAACAGAGCTAAAACCGTGCTTGTGTCACCAAAAATGAAAACCAAGATAAAACTTAATGCAAAGGTAAAGCAAGGTTTGTTGCGCAATGTTGAACTAGAAAAAG
AGTTGAACCGATTAAAGGGCAGTGTTAGCAAACAAGAACAGTTAGAAAAAGAAATTTCAGCATTAGACACAGAGGCCCGCGACCTGAACAGAAGAATGCATCGATTAAGA
AGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTTCATGAGTTGATGAAAGAGCTCGAAGATTG
CATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAAAAATGGAACGCTTGACGACCTACAATTAACGCTCAAGATTAGAGAAGATCAACTAGGGGACCTCATCA
ACGACAACAAGGGTCTAAGAGAGTCCGTTCAGTCACTTAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGATAGATTAATGAAAGACTATACCTATTTAAAGGAGCAG
TACGACAGATTAAGCGATGATTTTGGGTTTGCGAGACAGAACCACGCGACACTACGAAAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCCATACAATGAACGA
CCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGTTTCCATTTTTCAAGAATGAGCAAGTGCCTG
TACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGGTGACCATTACAGTTCCCAATTTAGATGATCCTGAAATCAGAAAAGAGCTAACGGGAGATGCG
ACCAAGCTATGCTTGGTACCAGATGTAATCCTCCCTCCAAAATTCAAGGTGCCCGAGTTTGAAAAGTATGATGGAGCATCCTGCCCTAAAAACCATCTCATCATGTATTG
CAGGAAGATGGCAGCATACGTCCAAAATGACAAACTGTTAATTCACTGCTTCCAGGACAGTCTTATTGGTCCAGCATCTCGATGGTATATGCAATTAGACAGCACTCATA
TATGTTCATGGAAGAATCTAGCCGATTCATTTTTAAAGCAATATAAGCACAACATAGATATGGCTCCTGACCGCCTAGACCTCCAGAGGATGGAAAAGAAGAGCACAGAA
AGCTTTAAAGAGTATGCCCAAAGGTGGAGGGATACTGCTGCTCAGGTGCAACCACCTTTAGCAGATAAGGAGCTGTCAACCATGTTTATTAATACTCTCAAATCTCCTTT
CTATGATAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTGGAGAGAGAATCAGTACGAAATTAAGCATGGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTATAGAAGATCAAGCAACAGTACGTCAATGGTCAGAAAATGTACAACAAATCCACGGAGATTCTTTAGTAGAAAATGTTATTTCTCAATTTAAGGATGTCAGTTT
TCCAGAAAGTCAATTAGAAGCAGTGAAACAGGCTTGGGAAAAATTAACTGTAGATAGGAAGGCTAAATTTACAAGCAAATATGGCTATCTAGCTCAGCTCATGTATGTAC
AAGTTAATTATTCTGTATTAAAAGCTTTGATTCGACATTGGGATCCAGCCTACAGATGTTTCACATTTGGCTCAATTGACATGACTCCTACAATAGAGGAATATCAATCC
CTTCTGCATATGCCAACACGAACAGAGGTTGAAGCTTATTCTTACGATCAAGAGCTTACAATGAAAAGAGCATTATCTACTCTTTTGGGCAAGATTCGTACGAGCGACAT
TGAGAAACAAGTAAAGATAAAAGGAGAGAACACATGCCTACCCCTAGACTACATCCTTACTCTTCAACAAAAATTTGCAAATGAAGACAAGGAGTTAACTTTACTGGCAT
TGTGTATCTTTATGTTGTTTTGTTTCCTAAATGTCACCGAATTCAAATGTCCAGAGATCAAATTTTCAAGTTCCTGGAATAAGCTGCGAAATCCCATTTCAGAGTTCGTG
CAATCAGGTTGGAGTTCATCCTCCCCTGAAAGGAGCGCTTGGGAAGCCTTTTTCTCCGAACTAAAGAGTGGTCAGTTTCATGATGATACCACAGAGGCGTACAAAACATG
GCATGCGAACAGAGCTAAAACCGTGCTTGTGTCACCAAAAATGAAAACCAAGATAAAACTTAATGCAAAGGTAAAGCAAGGTTTGTTGCGCAATGTTGAACTAGAAAAAG
AGTTGAACCGATTAAAGGGCAGTGTTAGCAAACAAGAACAGTTAGAAAAAGAAATTTCAGCATTAGACACAGAGGCCCGCGACCTGAACAGAAGAATGCATCGATTAAGA
AGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATCTGAGATTGCCTCACTTCATGAGTTGATGAAAGAGCTCGAAGATTG
CATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAAAAATGGAACGCTTGACGACCTACAATTAACGCTCAAGATTAGAGAAGATCAACTAGGGGACCTCATCA
ACGACAACAAGGGTCTAAGAGAGTCCGTTCAGTCACTTAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGATAGATTAATGAAAGACTATACCTATTTAAAGGAGCAG
TACGACAGATTAAGCGATGATTTTGGGTTTGCGAGACAGAACCACGCGACACTACGAAAAAGAGGCAAAATAATACCTGATATTGCTCAGTCCAGCCATACAATGAACGA
CCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCATCCATTGTACAATATTCCAGTAGAGCAGCACCCGTTTCCATTTTTCAAGAATGAGCAAGTGCCTG
TACACAATCAACCTGGATTTTCACTACCCACAGAGATACCTCCCAAGGTGACCATTACAGTTCCCAATTTAGATGATCCTGAAATCAGAAAAGAGCTAACGGGAGATGCG
ACCAAGCTATGCTTGGTACCAGATGTAATCCTCCCTCCAAAATTCAAGGTGCCCGAGTTTGAAAAGTATGATGGAGCATCCTGCCCTAAAAACCATCTCATCATGTATTG
CAGGAAGATGGCAGCATACGTCCAAAATGACAAACTGTTAATTCACTGCTTCCAGGACAGTCTTATTGGTCCAGCATCTCGATGGTATATGCAATTAGACAGCACTCATA
TATGTTCATGGAAGAATCTAGCCGATTCATTTTTAAAGCAATATAAGCACAACATAGATATGGCTCCTGACCGCCTAGACCTCCAGAGGATGGAAAAGAAGAGCACAGAA
AGCTTTAAAGAGTATGCCCAAAGGTGGAGGGATACTGCTGCTCAGGTGCAACCACCTTTAGCAGATAAGGAGCTGTCAACCATGTTTATTAATACTCTCAAATCTCCTTT
CTATGATAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTGGAGAGAGAATCAGTACGAAATTAAGCATGGAAAGATAA
Protein sequenceShow/hide protein sequence
MGIEDQATVRQWSENVQQIHGDSLVENVISQFKDVSFPESQLEAVKQAWEKLTVDRKAKFTSKYGYLAQLMYVQVNYSVLKALIRHWDPAYRCFTFGSIDMTPTIEEYQS
LLHMPTRTEVEAYSYDQELTMKRALSTLLGKIRTSDIEKQVKIKGENTCLPLDYILTLQQKFANEDKELTLLALCIFMLFCFLNVTEFKCPEIKFSSSWNKLRNPISEFV
QSGWSSSSPERSAWEAFFSELKSGQFHDDTTEAYKTWHANRAKTVLVSPKMKTKIKLNAKVKQGLLRNVELEKELNRLKGSVSKQEQLEKEISALDTEARDLNRRMHRLR
RDNEVSQATLKSRNDQVLKQQSEIASLHELMKELEDCISLRNQTITEVEEKNGTLDDLQLTLKIREDQLGDLINDNKGLRESVQSLNVRLGKYQDATDRLMKDYTYLKEQ
YDRLSDDFGFARQNHATLRKRGKIIPDIAQSSHTMNDPPIRQSTEGTTPKYHPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTEIPPKVTITVPNLDDPEIRKELTGDA
TKLCLVPDVILPPKFKVPEFEKYDGASCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLIGPASRWYMQLDSTHICSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTE
SFKEYAQRWRDTAAQVQPPLADKELSTMFINTLKSPFYDKMIGSASTNFSDIMTIGERISTKLSMER