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Lag0001256 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001256
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:28052773..28054736
RNA-Seq ExpressionLag0001256
SyntenyLag0001256
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------
        K A  +   +    ++  ++ T  E N+    DNPRMGALKFL +LQKK       +ERGLMYV+ W+NQ                              
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

KAA0062340.1 polyprotein [Cucumis melo var. makuwa]2.5e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q
        K A  +   +    +E  +  T  E ++    DNPRMGALKFL +LQKK E     +ERGLMYV+ W+N                              +
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

TYK26634.1 polyprotein [Cucumis melo var. makuwa]2.5e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q
        K A  +   +    +E  +  T  E ++    DNPRMGALKFL +LQKK E     +ERGLMYV+ W+N                              +
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]2.5e-0937.6Show/hide
Query:  KVAMTSLTGTTGPGNE-TIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------QRDS
        + A+T+L  +    NE  + T    E +E+ PRMGALKFL A+QK+  G K + E+GLM+V+A +N                              ++D+
Subjt:  KVAMTSLTGTTGPGNE-TIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------QRDS

Query:  RKMKTVNSAALPIMGIAKRETVKLG
         KMK VNS ALPI+G++KR T+KLG
Subjt:  RKMKTVNSAALPIMGIAKRETVKLG

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]6.2e-1648.8Show/hide
Query:  MKVAMTSLTGTTGPGNETIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------RDS
        ++    +LT       E  ET T  E  +DNPRMGALKFL ALQKK+E  KE LERGLMYVEAWVNQ                              +D 
Subjt:  MKVAMTSLTGTTGPGNETIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------RDS

Query:  RKMKTVNSAALPIMGIAKRETVKLG
         KMK VNSAALPIMG+AKR +VKLG
Subjt:  RKMKTVNSAALPIMGIAKRETVKLG

TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase1.2e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------
        K A  +   +    ++  ++ T  E N+    DNPRMGALKFL +LQKK       +ERGLMYV+ W+NQ                              
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

A0A5A7V526 Polyprotein1.2e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q
        K A  +   +    +E  +  T  E ++    DNPRMGALKFL +LQKK E     +ERGLMYV+ W+N                              +
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

A0A5D3DSU8 Polyprotein1.2e-0935.94Show/hide
Query:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q
        K A  +   +    +E  +  T  E ++    DNPRMGALKFL +LQKK E     +ERGLMYV+ W+N                              +
Subjt:  KVAMTSLTGTTGPGNETIETSTTNETNE----DNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------Q

Query:  RDSRKMKTVNSAALPIMGIAKRETVKLG
        +D+ +MK VNSAALPI+G+ KR  ++LG
Subjt:  RDSRKMKTVNSAALPIMGIAKRETVKLG

A0A6J1DK29 uncharacterized protein LOC1110218291.2e-0937.6Show/hide
Query:  KVAMTSLTGTTGPGNE-TIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------QRDS
        + A+T+L  +    NE  + T    E +E+ PRMGALKFL A+QK+  G K + E+GLM+V+A +N                              ++D+
Subjt:  KVAMTSLTGTTGPGNE-TIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVN------------------------------QRDS

Query:  RKMKTVNSAALPIMGIAKRETVKLG
         KMK VNS ALPI+G++KR T+KLG
Subjt:  RKMKTVNSAALPIMGIAKRETVKLG

A0A6J1DLQ6 uncharacterized protein LOC1110223203.0e-1648.8Show/hide
Query:  MKVAMTSLTGTTGPGNETIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------RDS
        ++    +LT       E  ET T  E  +DNPRMGALKFL ALQKK+E  KE LERGLMYVEAWVNQ                              +D 
Subjt:  MKVAMTSLTGTTGPGNETIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQ------------------------------RDS

Query:  RKMKTVNSAALPIMGIAKRETVKLG
         KMK VNSAALPIMG+AKR +VKLG
Subjt:  RKMKTVNSAALPIMGIAKRETVKLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTTCTTGGTGATCTTCAATCTCCCAGTACTATTCGGCTTCCAAGGGGAAACATGGAATGATTTTGTTCCCAGTTTTGCTGCAGCACAGAATTTGCTCCCTCCAGT
CGCTCAGCAGCATAATCTGCGCAAAATAATTTCCAATGCTTCCATTCTTCCAAATGGATGTAACTGGATCAAGGATTGTCTCACAGAGTTCACAACAACAAATTCCCCTA
GTGATCGGAAGACATCGCCATTATCCACTAAGTCAATGGTGTTTCAAGGAGAGGAAGATGTAATCATGAATGTGGATGTAGCTTTCGATACAGCCAATTGTAAGATTGGG
ATTGGTGTGGTACTAAGAGATAAGCAGGGGAACATGAAGGTTGCAATGACTTCATTGACGGGCACTACGGGACCGGGGAATGAAACTATTGAGACTAGCACGACGAATGA
GACGAATGAAGACAACCCTCGCATGGGAGCCTTGAAGTTCCTATTTGCCCTCCAGAAGAAGTCTGAAGGGGCCAAGGAGTCGCTTGAACGTGGTCTCATGTACGTAGAAG
CGTGGGTTAATCAGAGAGATTCAAGAAAGATGAAAACGGTGAACTCAGCCGCCCTACCGATCATGGGAATTGCTAAGAGAGAGACAGTTAAGTTGGGACTTGGAATGGCC
AGACAGATGTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTTCTTGGTGATCTTCAATCTCCCAGTACTATTCGGCTTCCAAGGGGAAACATGGAATGATTTTGTTCCCAGTTTTGCTGCAGCACAGAATTTGCTCCCTCCAGT
CGCTCAGCAGCATAATCTGCGCAAAATAATTTCCAATGCTTCCATTCTTCCAAATGGATGTAACTGGATCAAGGATTGTCTCACAGAGTTCACAACAACAAATTCCCCTA
GTGATCGGAAGACATCGCCATTATCCACTAAGTCAATGGTGTTTCAAGGAGAGGAAGATGTAATCATGAATGTGGATGTAGCTTTCGATACAGCCAATTGTAAGATTGGG
ATTGGTGTGGTACTAAGAGATAAGCAGGGGAACATGAAGGTTGCAATGACTTCATTGACGGGCACTACGGGACCGGGGAATGAAACTATTGAGACTAGCACGACGAATGA
GACGAATGAAGACAACCCTCGCATGGGAGCCTTGAAGTTCCTATTTGCCCTCCAGAAGAAGTCTGAAGGGGCCAAGGAGTCGCTTGAACGTGGTCTCATGTACGTAGAAG
CGTGGGTTAATCAGAGAGATTCAAGAAAGATGAAAACGGTGAACTCAGCCGCCCTACCGATCATGGGAATTGCTAAGAGAGAGACAGTTAAGTTGGGACTTGGAATGGCC
AGACAGATGTCGTAA
Protein sequenceShow/hide protein sequence
MVFLVIFNLPVLFGFQGETWNDFVPSFAAAQNLLPPVAQQHNLRKIISNASILPNGCNWIKDCLTEFTTTNSPSDRKTSPLSTKSMVFQGEEDVIMNVDVAFDTANCKIG
IGVVLRDKQGNMKVAMTSLTGTTGPGNETIETSTTNETNEDNPRMGALKFLFALQKKSEGAKESLERGLMYVEAWVNQRDSRKMKTVNSAALPIMGIAKRETVKLGLGMA
RQMS