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Lag0001261 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001261
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:28163602..28165187
RNA-Seq ExpressionLag0001261
SyntenyLag0001261
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7115099.1 hypothetical protein RHSIM_RhsimUnG0064500 [Rhododendron simsii]3.0e-2150.88Show/hide
Query:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH
        +S AS H+ S R  F S+I G  G V+MGN   SK  G+GDV L+T  G KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  +++L  GS VVA G 
Subjt:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH

Query:  RKSTLYKCQLDVAK
        + STLY  Q  ++K
Subjt:  RKSTLYKCQLDVAK

KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]1.2e-2050Show/hide
Query:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH
        +S AS H+ S R  F S+  G  G V+MGN   SK  G+GDV L+T  G KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  +++L  GS VVA G 
Subjt:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH

Query:  RKSTLYKCQLDVAK
        + STLY  Q  ++K
Subjt:  RKSTLYKCQLDVAK

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]3.0e-2150.88Show/hide
Query:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH
        +S AS H+ S R  F S+  G  G V+MGN   SK  G+GDV L+T  G KL+L+DVR VPNI++NLIS GKL D+GY+ +FG  +++L  GS VVA G 
Subjt:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH

Query:  RKSTLYKCQLDVAK
        + STLY  Q  ++K
Subjt:  RKSTLYKCQLDVAK

KAF7129546.1 hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii]8.9e-2149.12Show/hide
Query:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH
        +S AS H+ S R  F S+  G  G V+MGN   SK  G+GDV L+T  G KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  +++L  GS +VA G 
Subjt:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH

Query:  RKSTLYKCQLDVAK
        + STLY  Q+ ++K
Subjt:  RKSTLYKCQLDVAK

KAF7130883.1 hypothetical protein RHSIM_Rhsim10G0164600 [Rhododendron simsii]1.0e-2151.3Show/hide
Query:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH
        +S AS H+ S R  F S+I G  G V+MGN   SK  G+GDV L+T  G KL+L+DVR VP+I++NLIS GKL D+GY+ +FG  +++L  GS VVA G 
Subjt:  NSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGH

Query:  RKSTLYKCQLDVAKR
        + STLY  Q  ++KR
Subjt:  RKSTLYKCQLDVAKR

TrEMBL top hitse value%identityAlignment
A0A2I0IXX9 Integrase catalytic domain-containing protein1.1e-1941.48Show/hide
Query:  LTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAV
        + ++  S H+   R  F+S+  G +G V+MGNG++ K  GIGDV L+TE G KL+L+ VR VP I++NLIS+G+L D+GY  EF   +++L  GS +VA 
Subjt:  LTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAV

Query:  GHRKSTLYKCQLDVAKRSRRQWMSVKAADDPAAKI
        G +  TLY+       R+R     V  A+D + K+
Subjt:  GHRKSTLYKCQLDVAKRSRRQWMSVKAADDPAAKI

A0A438BTH6 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1941.79Show/hide
Query:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC
        +++ +  +V L+    + + +S AS H+ S    FTS+ +G  G V+MGN   SK  G+GD+ L+T  G KL+LRDVR VP+I++NLIS GKL D+GY  
Subjt:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC

Query:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK
         F   +++L  GS VVA G +  +LY  Q  + K
Subjt:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK

A0A438HI91 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1941.79Show/hide
Query:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC
        +++ +  +V L+    + + +S AS H+ S    FTS+ +G  G V+MGN   SK  G+GD+ L+T  G KL+LRDVR VP+I++NLIS GKL D+GY  
Subjt:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC

Query:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK
         F   +++L  GS VVA G +  +LY  Q  + K
Subjt:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK

A0A438I3N7 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1941.04Show/hide
Query:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC
        +++ +  ++ L+    + + +S AS H+ S    FTS+ +G  G V+MGN   SK  G+GD+ L+T  G KL+LRDVR VP+I++NLIS GKL D+GY  
Subjt:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC

Query:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK
         F   +++L  GS VVA G++  +LY  Q  + K
Subjt:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK

A0A438IBT7 Retrovirus-related Pol polyprotein from transposon TNT 1-946.9e-1941.79Show/hide
Query:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC
        +++ +  +V L+    + + +S AS H+ S    FTS+ +G  G V+MGN   SK  G+GD+ L+T  G KL+LRDVR VP+I++NLIS GKL D+GY  
Subjt:  LVVHETTAVKLM----EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRC

Query:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK
         F   +++L  GS VVA G +  +LY  Q  + K
Subjt:  EFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-1943.22Show/hide
Query:  EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVV
        E + ++AAS H    R LF  ++ G  G VKMGN   SK +GIGD+ +KT  G  LVL+DVR VP+++MNLIS   L  DGY   F  ++++L  GS V+
Subjt:  EALTNSAASVHIASDRSLFTSFIEGHHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVV

Query:  AVGHRKSTLYKCQLDVAK
        A G  + TLY+   ++ +
Subjt:  AVGHRKSTLYKCQLDVAK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCCCTTTCTCTTCCTCGCTTGCATAGTACTAATCGTTTGTCTTCAAGCTGATTCTGCTCCTTCTGAAATGGGGGAGAGCTTGAATCTCATTAGATCTTGTTT
TTCCAAGTTTCCACCTGATATTTCGGTTGAGGATCTAAGTGTTGAGTTTGGAGCCCAAAACAAGGCCCACCAAATCATTGCTGCGAGATTATCAATGGATGTGGCAAGTC
TAGTGGTCCATGAGACAACTGCGGTTAAATTGATGGAAGCACTTACAAACAGTGCAGCATCTGTACACATAGCTTCAGATAGGAGTTTGTTTACATCATTTATAGAAGGA
CATCATGGTCTAGTGAAGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTTTGAAGACAGAGTGTGGAGATAAATTGGTACTGCGAGATGTCAG
GTTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTAGCAGATGATGGTTACAGGTGTGAGTTTGGTAGACGCCAGTTTCAACTGAAGATAGGATCCCAAG
TAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTCAGTTGGATGTTGCCAAAAGATCAAGGAGACAATGGATGTCGGTTAAAGCTGCAGATGATCCAGCAGCA
AAGATAGCCAATTTCGATCAATCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCATGAATCCCCAGTTGTCAGACGCTCGAATAAATT
GAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGCTAAGGTCAAAGGTCGGGTCTCTAGCTTGGCAACAGGTATTTTGAGCCTTGGAGTTT
TACCAAGAAGATCAAAGATAACAGTTGTAGTGGGAGTAAATCCTTGGAATTTGCCAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCCCTTTCTCTTCCTCGCTTGCATAGTACTAATCGTTTGTCTTCAAGCTGATTCTGCTCCTTCTGAAATGGGGGAGAGCTTGAATCTCATTAGATCTTGTTT
TTCCAAGTTTCCACCTGATATTTCGGTTGAGGATCTAAGTGTTGAGTTTGGAGCCCAAAACAAGGCCCACCAAATCATTGCTGCGAGATTATCAATGGATGTGGCAAGTC
TAGTGGTCCATGAGACAACTGCGGTTAAATTGATGGAAGCACTTACAAACAGTGCAGCATCTGTACACATAGCTTCAGATAGGAGTTTGTTTACATCATTTATAGAAGGA
CATCATGGTCTAGTGAAGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTTTGAAGACAGAGTGTGGAGATAAATTGGTACTGCGAGATGTCAG
GTTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTAGCAGATGATGGTTACAGGTGTGAGTTTGGTAGACGCCAGTTTCAACTGAAGATAGGATCCCAAG
TAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTCAGTTGGATGTTGCCAAAAGATCAAGGAGACAATGGATGTCGGTTAAAGCTGCAGATGATCCAGCAGCA
AAGATAGCCAATTTCGATCAATCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCATGAATCCCCAGTTGTCAGACGCTCGAATAAATT
GAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGCTAAGGTCAAAGGTCGGGTCTCTAGCTTGGCAACAGGTATTTTGAGCCTTGGAGTTT
TACCAAGAAGATCAAAGATAACAGTTGTAGTGGGAGTAAATCCTTGGAATTTGCCAAGATGA
Protein sequenceShow/hide protein sequence
MRNPFLFLACIVLIVCLQADSAPSEMGESLNLIRSCFSKFPPDISVEDLSVEFGAQNKAHQIIAARLSMDVASLVVHETTAVKLMEALTNSAASVHIASDRSLFTSFIEG
HHGLVKMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGRRQFQLKIGSQVVAVGHRKSTLYKCQLDVAKRSRRQWMSVKAADDPAA
KIANFDQSDHDPSIQKQLGSPGDGYHESPVVRRSNKLKKSLRRVEASKWKAKAVAKVKGRVSSLATGILSLGVLPRRSKITVVVGVNPWNLPR