CuGenDBv2

Gene ID	Lag0001272
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr4:28359991..28360674
RNA-Seq Expression	Lag0001272
Synteny	Lag0001272
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]

4.0e-39

44.2

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+H  +AK+IW+ L  I+++R LA+ M+ K KL  ++KG MSLKEYF KIQQ  DAL+++ K +  +DHIL+IL+GLG+EY+S++S+ISA+    S  + 
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQK--------SNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKC
        M++LLTQE++IESK+ +S+ SLP+VN++  ++ I    ++        SN   ++  ++  +   R GGR  RGGR    NR+  QCQ+C KF H A +C
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQK--------SNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKC

Query:  YFRYAPPSAPTPPGSYPSNSYNPF
        YFRY P +   PP  Y +NS N F
Subjt:  YFRYAPPSAPTPPGSYPSNSYNPF

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.6e-42

48.25

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+HC +AKEIWE L  IF++R LAQ M+ K KL  I+KG M LKEYF KI Q  DAL+++ K V  +DHIL+IL+GLGS+Y+SM+SVISA+    S  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP
        M++LLTQE++ ESKL  S+ +LPSVN+  Q+     +   ++N   +    +   RGGRG GR  RG R    NRN PQCQ+C K  ++A +C+FRY P 
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP

Query:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS
        S  +    Y  NS+N  +   +  PQMS
Subjt:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.6e-42

48.25

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+HC +AKEIWE L  IF++R LAQ M+ K KL  I+KG M LKEYF KI Q  DAL+++ K V  +DHIL+IL+GLGS+Y+SM+SVISA+    S  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP
        M++LLTQE++ ESKL  S+ +LPSVN+  Q+     +   ++N   +    +   RGGRG GR  RG R    NRN PQCQ+C K  ++A +C+FRY P 
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP

Query:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS
        S  +    Y  NS+N  +   +  PQMS
Subjt:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS

XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]

1.3e-37

47.24

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        MIHC TA+E+W+ L  ++T+RNLA++M++K+KL+ I+KG + LK+YF K++   D+L+A GK V VEDHI+ IL+GL SE+ES VSVISA+   Q+  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY
         ++LL+ E R E    ++ G+LPSVNL+ Q+K        SN  Q     +P    NR    G    R  R+WN+N N PQCQ+ GKF HTA +CY R+
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY

XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]

1.3e-37

47.24

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        MIHC TA+E+W+ L  ++T+RNLA++M++K+KL+ I+KG + LK+YF K++   D+L+A GK V VEDHI+ IL+GL SE+ES VSVISA+   Q+  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY
         ++LL+ E R E    ++ G+LPSVNL+ Q+K        SN  Q     +P    NR    G    R  R+WN+N N PQCQ+ GKF HTA +CY R+
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.2e-42

48.25

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+HC +AKEIWE L  IF++R LAQ M+ K KL  I+KG M LKEYF KI Q  DAL+++ K V  +DHIL+IL+GLGS+Y+SM+SVISA+    S  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP
        M++LLTQE++ ESKL  S+ +LPSVN+  Q+     +   ++N   +    +   RGGRG GR  RG R    NRN PQCQ+C K  ++A +C+FRY P 
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP

Query:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS
        S  +    Y  NS+N  +   +  PQMS
Subjt:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.2e-42

48.25

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+HC +AKEIWE L  IF++R LAQ M+ K KL  I+KG M LKEYF KI Q  DAL+++ K V  +DHIL+IL+GLGS+Y+SM+SVISA+    S  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP
        M++LLTQE++ ESKL  S+ +LPSVN+  Q+     +   ++N   +    +   RGGRG GR  RG R    NRN PQCQ+C K  ++A +C+FRY P 
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQ-KSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPP

Query:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS
        S  +    Y  NS+N  +   +  PQMS
Subjt:  SAPTPPGSYPSNSYN-PFNRPSFFPQMS

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon

1.9e-39

44.2

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        M+H  +AK+IW+ L  I+++R LA+ M+ K KL  ++KG MSLKEYF KIQQ  DAL+++ K +  +DHIL+IL+GLG+EY+S++S+ISA+    S  + 
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQK--------SNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKC
        M++LLTQE++IESK+ +S+ SLP+VN++  ++ I    ++        SN   ++  ++  +   R GGR  RGGR    NR+  QCQ+C KF H A +C
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQK--------SNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKC

Query:  YFRYAPPSAPTPPGSYPSNSYNPF
        YFRY P +   PP  Y +NS N F
Subjt:  YFRYAPPSAPTPPGSYPSNSYNPF

A0A6J1C6N9 dr1-associated corepressor homolog isoform X1

6.2e-38

47.24

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        MIHC TA+E+W+ L  ++T+RNLA++M++K+KL+ I+KG + LK+YF K++   D+L+A GK V VEDHI+ IL+GL SE+ES VSVISA+   Q+  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY
         ++LL+ E R E    ++ G+LPSVNL+ Q+K        SN  Q     +P    NR    G    R  R+WN+N N PQCQ+ GKF HTA +CY R+
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY

A0A6J1C8R2 dr1-associated corepressor homolog isoform X2

6.2e-38

47.24

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Query:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV
        MIHC TA+E+W+ L  ++T+RNLA++M++K+KL+ I+KG + LK+YF K++   D+L+A GK V VEDHI+ IL+GL SE+ES VSVISA+   Q+  EV
Subjt:  MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEV

Query:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY
         ++LL+ E R E    ++ G+LPSVNL+ Q+K        SN  Q     +P    NR    G    R  R+WN+N N PQCQ+ GKF HTA +CY R+
Subjt:  MTVLLTQENRIESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQF---SQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.1e-06

26.63

Show/hide

Query:  TAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEVMTVLL
        T+++IW  +   F     A+ +++ ++L+T   G M + +Y+ K+++ AD+L  V   V   + ++++L+GL  +++++++VI  +    S  +  T+L 
Subjt:  TAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEVMTVLL

Query:  TQENRIESKLASS----KGSLPSVNLSVQSKPIDPDVQKSNPPQFSQPSASGNRG-GRGGGRF-GRGGR
         +E+R++  +  +      S  S  L+    P   + Q+S   Q       G RG GRG   F GRGGR
Subjt:  TQENRIESKLASS----KGSLPSVNLSVQSKPIDPDVQKSNPPQFSQPSASGNRG-GRGGGRF-GRGGR

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.2e-09

27.51

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Query:  TAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEVMTVLL
        TA+++W  L  +F     A+ ++ + +L+T     +S+ EY  K++  +D L+ V   +     ++ +L+GL  +Y+ +++VI  K    S  E  ++LL
Subjt:  TAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEVMTVLL

Query:  TQENRIESKLASSKGSLPSVNLSVQSKPI--DPDVQKSNPPQFSQPSASGNRG-----GRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAP
         +E+R+ +K   SK SL   N    S  +   P  Q+  P ++   +++  RG      RGGG     GR +NNN N        + N   T   + Y P
Subjt:  TQENRIESKLASSKGSLPSVNLSVQSKPI--DPDVQKSNPPQFSQPSASGNRG-----GRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAP

Query:  PSAPTPPGSYPSNSYNPFNRPSFFPQMSP
        P +P     YP      F++ ++FPQ  P
Subjt:  PSAPTPPGSYPSNSYNPFNRPSFFPQMSP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCCACTGTGGTACGGCAAAGGAAATTTGGGAATGTCTTCATCAAATTTTCACCACTCGAAACCTTGCACAAATGATGAAGATCAAAACTAAATTACAGACTATACA
AAAAGGAGGTATGTCCCTGAAAGAATACTTTTCAAAGATTCAGCAATATGCTGATGCTCTGTCTGCGGTTGGTAAGTCTGTTGATGTTGAGGATCATATTCTTTTTATCT
TATCTGGTCTTGGATCTGAATATGAATCCATGGTTTCTGTTATCTCGGCTAAGATTGGTCCTCAATCGGCTCATGAAGTGATGACTGTTCTTCTTACTCAAGAGAACCGT
ATTGAAAGTAAACTTGCTAGCTCTAAGGGGTCTCTTCCCTCAGTTAATCTCTCGGTTCAGTCAAAACCTATTGATCCTGATGTGCAAAAATCTAACCCGCCTCAGTTTTC
TCAGCCTTCTGCATCTGGTAATCGTGGTGGTCGTGGTGGTGGTCGGTTCGGTAGGGGTGGCCGCTCTTGGAACAACAACAGAAATTGCCCTCAATGCCAACTGTGTGGCA
AGTTTAATCACACAGCAACGAAATGCTACTTTCGTTATGCACCTCCCAGTGCTCCTACCCCTCCAGGTTCGTATCCTTCCAATTCTTATAATCCGTTTAACCGTCCTTCT
TTCTTTCCTCAGATGAGTCCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MIHCGTAKEIWECLHQIFTTRNLAQMMKIKTKLQTIQKGGMSLKEYFSKIQQYADALSAVGKSVDVEDHILFILSGLGSEYESMVSVISAKIGPQSAHEVMTVLLTQENR
IESKLASSKGSLPSVNLSVQSKPIDPDVQKSNPPQFSQPSASGNRGGRGGGRFGRGGRSWNNNRNCPQCQLCGKFNHTATKCYFRYAPPSAPTPPGSYPSNSYNPFNRPS
FFPQMSP

Lag0001272 (gene) of Sponge gourd (AG-4) v1 genome