; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001280 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001280
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:28452448..28452981
RNA-Seq ExpressionLag0001280
SyntenyLag0001280
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3466619.1 reverse transcriptase [Gossypium australe]9.2e-0738.55Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   AS+ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

XP_016753135.1 uncharacterized protein LOC107961535 isoform X2 [Gossypium hirsutum]1.6e-0637.35Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   A++ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.2e-0837.98Show/hide
Query:  WISSYLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFE
        WISSY +++ +A +                   N+  SP Q   P  S RWLPP  +  K+NSD +  S  +S G+GLIIRD    +  A S+F+     
Subjt:  WISSYLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFE

Query:  THLAEIWAILEGLKWALSLGYMRLIVEFD
           AEI  ILE LK A S  Y RL+VE D
Subjt:  THLAEIWAILEGLKWALSLGYMRLIVEFD

XP_030495196.1 uncharacterized protein LOC115710989 [Cannabis sativa]4.1e-0734.92Show/hide
Query:  YLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLA
        YL+++  A  KY           RPP  ++Q  SPS       S  W PPP  T KLN D +   + S IGVG +IR++   + AA S+ +  NF +H  
Subjt:  YLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLA

Query:  EIWAILEGLKWALSLGYMRLIVEFDS
        E  A+  G+ W L       IVE D+
Subjt:  EIWAILEGLKWALSLGYMRLIVEFDS

XP_040967151.1 uncharacterized protein LOC107961535 isoform X1 [Gossypium hirsutum]1.6e-0637.35Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   A++ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

TrEMBL top hitse value%identityAlignment
A0A1U8PPM7 uncharacterized protein LOC1079615357.6e-0737.35Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   A++ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

A0A5B6VBV0 Reverse transcriptase4.5e-0738.55Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   AS+ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

A0A6J1BQ49 uncharacterized protein LOC1110047861.1e-0837.98Show/hide
Query:  WISSYLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFE
        WISSY +++ +A +                   N+  SP Q   P  S RWLPP  +  K+NSD +  S  +S G+GLIIRD    +  A S+F+     
Subjt:  WISSYLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFE

Query:  THLAEIWAILEGLKWALSLGYMRLIVEFD
           AEI  ILE LK A S  Y RL+VE D
Subjt:  THLAEIWAILEGLKWALSLGYMRLIVEFD

A0A6P4PCI6 uncharacterized protein LOC108482459 isoform X29.9e-0737.35Show/hide
Query:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY
        NRW+PPP    K+N D +        G+G+IIRD E  +   A++ +D   E ++ E WA ++ LK A  +GY R+I+E D +
Subjt:  NRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAEIWAILEGLKWALSLGYMRLIVEFDSY

A0A803P623 Uncharacterized protein2.0e-0734.92Show/hide
Query:  YLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLA
        YL+++  A  KY           RPP  ++Q  SPS       S  W PPP  T KLN D +   + S IGVG +IR++   + AA S+ +  NF +H  
Subjt:  YLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLA

Query:  EIWAILEGLKWALSLGYMRLIVEFDS
        E  A+  G+ W L       IVE D+
Subjt:  EIWAILEGLKWALSLGYMRLIVEFDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAAGCCGGTGGATTTCGAGTTACCTGGAAGATTTCCTGAAGGCTAATCAGAAATATGTTCCTCATGCGATTTCCTCTTCCAAGCAGAGGCGACCTCCGTTGAA
TACGAATCAAGGAGCCTCCCCTTCTCAGCAAATCAGACCTTTTTTGAGTAATCGATGGTTGCCTCCTCCATGCAATACTCGGAAGTTAAACTCTGATATTTCTAGGGTTT
CGTCTCCCTCTTCGATTGGAGTCGGTTTGATTATTCGAGATTGGGAAAGGAGTATCAGAGCCGCTGCAAGTCTTTTTGTGGATTTCAATTTTGAGACTCATTTGGCTGAG
ATTTGGGCTATTTTGGAAGGCTTAAAGTGGGCCTTATCCCTAGGCTATATGAGGCTTATTGTGGAGTTTGATAGCTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAAGCCGGTGGATTTCGAGTTACCTGGAAGATTTCCTGAAGGCTAATCAGAAATATGTTCCTCATGCGATTTCCTCTTCCAAGCAGAGGCGACCTCCGTTGAA
TACGAATCAAGGAGCCTCCCCTTCTCAGCAAATCAGACCTTTTTTGAGTAATCGATGGTTGCCTCCTCCATGCAATACTCGGAAGTTAAACTCTGATATTTCTAGGGTTT
CGTCTCCCTCTTCGATTGGAGTCGGTTTGATTATTCGAGATTGGGAAAGGAGTATCAGAGCCGCTGCAAGTCTTTTTGTGGATTTCAATTTTGAGACTCATTTGGCTGAG
ATTTGGGCTATTTTGGAAGGCTTAAAGTGGGCCTTATCCCTAGGCTATATGAGGCTTATTGTGGAGTTTGATAGCTATTGA
Protein sequenceShow/hide protein sequence
MYESRWISSYLEDFLKANQKYVPHAISSSKQRRPPLNTNQGASPSQQIRPFLSNRWLPPPCNTRKLNSDISRVSSPSSIGVGLIIRDWERSIRAAASLFVDFNFETHLAE
IWAILEGLKWALSLGYMRLIVEFDSY