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Lag0001286 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001286
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:28502149..28502610
RNA-Seq ExpressionLag0001286
SyntenyLag0001286
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]7.4e-3757.14Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ +AG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT   K KV +  HIT+EE  D ++ K D  Q+ SVFD I  P  R SV Q
Subjt:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

KAA0055891.1 uncharacterized protein E6C27_scaffold438G00090 [Cucumis melo var. makuwa]3.9e-3859.09Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT  RK KV +  HIT+EE  D E+ KND  Q+ SVFD I     R SV Q
Subjt:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]2.1e-3656.49Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        P+RIT K   KV +  HIT+EE  D ++ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]2.8e-3656.49Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        P+RIT K   KV +  HIT+EE  D ++ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]4.3e-3758.44Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY+  E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKWKVVDAH--HITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT K KV  A+  HIT+EE  D E+ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKWKVVDAH--HITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

TrEMBL top hitse value%identityAlignment
A0A5A7U2W9 Gag protease polyprotein3.6e-3757.14Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ +AG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT   K KV +  HIT+EE  D ++ K D  Q+ SVFD I  P  R SV Q
Subjt:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

A0A5A7UQP2 Integrase catalytic domain-containing protein1.9e-3859.09Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT  RK KV +  HIT+EE  D E+ KND  Q+ SVFD I     R SV Q
Subjt:  PVRIT--RKWKVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

A0A5A7V4F2 Reverse transcriptase domain-containing protein1.0e-3656.49Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        P+RIT K   KV +  HIT+EE  D ++ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

A0A5D3BTY1 Ribonuclease H1.4e-3656.49Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY   E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        P+RIT K   KV +  HIT+EE  D ++ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKW--KVVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

A0A5D3C783 Ribonuclease H2.1e-3758.44Show/hide
Query:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE
        EILKENFT PLT I K E ++ +    +  LP+RRT  GFDP AYKL+ KAGYDF T TE+KS++IFD R E SPTQKKLQK+GY+IP+ RAG+GY+  E
Subjt:  EILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPE

Query:  PVRITRKWKVVDAH--HITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ
        PVRIT K KV  A+  HIT+EE  D E+ K D  Q+ SVFD I     R SV Q
Subjt:  PVRITRKWKVVDAH--HITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTCTAAAAGAAAATTTCACCACACCTCTGACAGCAATTACCAAGCAAGAGATTCAGGAATCAAAGACTAATCGTACCAAAGTGACTTTGCCGAAAAGACGAAC
GAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTAGAACTCATACTGAAATTAAAAGTCTACAAATCTTCGATGGGAGATCTGAGC
CTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGGTTATGCCATACCATCCTTGAGAGCCGGACTAGGGTACAATCCCCCAGAGCCAGTTCGTATAACTAGAAAATGGAAA
GTTGTAGATGCACATCACATAACGATAGAAGAGGTGAGCGATCCAGAAGATAAAAAGAATGATGATGGCCAGAAAATCTCTGTCTTCGATCACATTAGAGCACCGACTAC
TCGTCTTTCAGTTCATCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTCTAAAAGAAAATTTCACCACACCTCTGACAGCAATTACCAAGCAAGAGATTCAGGAATCAAAGACTAATCGTACCAAAGTGACTTTGCCGAAAAGACGAAC
GAAGGCTGGATTTGACCCAAATGCATACAAACTCCTAGAAAAGGCAGGATACGACTTTAGAACTCATACTGAAATTAAAAGTCTACAAATCTTCGATGGGAGATCTGAGC
CTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGGTTATGCCATACCATCCTTGAGAGCCGGACTAGGGTACAATCCCCCAGAGCCAGTTCGTATAACTAGAAAATGGAAA
GTTGTAGATGCACATCACATAACGATAGAAGAGGTGAGCGATCCAGAAGATAAAAAGAATGATGATGGCCAGAAAATCTCTGTCTTCGATCACATTAGAGCACCGACTAC
TCGTCTTTCAGTTCATCAGTGA
Protein sequenceShow/hide protein sequence
MEILKENFTTPLTAITKQEIQESKTNRTKVTLPKRRTKAGFDPNAYKLLEKAGYDFRTHTEIKSLQIFDGRSEPSPTQKKLQKEGYAIPSLRAGLGYNPPEPVRITRKWK
VVDAHHITIEEVSDPEDKKNDDGQKISVFDHIRAPTTRLSVHQ