; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001308 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001308
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:29137448..29145000
RNA-Seq ExpressionLag0001308
SyntenyLag0001308
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5447348.1 hypothetical protein F2P56_032905 [Juglans regia]1.3e-1840.91Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS
        M KMGF+  W++ +MNCVE+V +S ++NGSPQ+ F P RG+RQGDPLSPYLF++C+E                                 D SL+F KA+
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS

Query:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS
          E  +++ VL  YEKA+ Q  N DK  +H S
Subjt:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS

XP_018834507.1 uncharacterized protein LOC109001610 [Juglans regia]1.6e-1942.42Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS
        M KMGF+  WI+ +MNCVESV +S L+NGSPQD F+P RG+RQGDPLSPYLF++C+E                                 D SL+F KA+
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS

Query:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS
          E  +++ VL +YE A+ Q+ N +K ++H S
Subjt:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS

XP_018853114.2 uncharacterized protein LOC109015083 [Juglans regia]1.7e-1840.15Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS
        ++KMGF   WI+ IMNCVE+V +S L+NGSPQ +F P RG+RQGDPLSPYLF++C+E                                 D SL+F K++
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS

Query:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS
          E  +++++L +YEKA+ Q  N +K ++H S
Subjt:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS

XP_038716200.1 uncharacterized protein LOC120009617 [Tripterygium wilfordii]2.7e-1953.76Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDK
        M K+GF  +W+  I+ CV SV FS LING+   +F P R LRQGDPLSP+LFL C+ED SL+F KA+M+E + +  +L+VYE+A+ Q  N DK
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDK

XP_042952220.1 uncharacterized protein LOC122289300 [Carya illinoinensis]1.3e-1840.94Show/hide
Query:  KMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKASME
        K+GFS +W+E +MNC+E+V ++ L+NG PQ TF+P RG+RQGDPLSPYLF++C+E                                 D SL+F KA+ E
Subjt:  KMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKASME

Query:  EGEKIMEVLEVYEKATCQNTNLDKVNV
        E  +++ +L VYE A+ Q  NLDK ++
Subjt:  EGEKIMEVLEVYEKATCQNTNLDKVNV

TrEMBL top hitse value%identityAlignment
A0A2I4FS81 uncharacterized protein LOC1090016107.6e-2042.42Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS
        M KMGF+  WI+ +MNCVESV +S L+NGSPQD F+P RG+RQGDPLSPYLF++C+E                                 D SL+F KA+
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSE---------------------------------DASLIFFKAS

Query:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS
          E  +++ VL +YE A+ Q+ N +K ++H S
Subjt:  MEEGEKIMEVLEVYEKATCQNTNLDKVNVHGS

A0A2N9ESZ1 Uncharacterized protein1.7e-1952.22Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTN
        M KMGF   W+  +M C+ +V +S LING P+    P RGLRQGDP+SPYLFLIC+ED SL+F +A+  E +K+ ++L+ YEKA+ Q  N
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTN

A0A2N9GYK3 Uncharacterized protein1.7e-1954.17Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNV
        M KMGF   WI  +  C+ SV +S LING P     P RGLRQGDPLSPYLFL+C+ED SL+F KA+    EKI  +L  YEKA+ Q  N DK  +
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNV

A0A2N9IXK4 RNase H domain-containing protein3.6e-2252.08Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNV
        M KMGF+  W+  ++ C+ +V FS LING+P+  FRP RGLRQGDPLSPYLFL+C+ED SL+F +A+ ++ E I+++L +YE A+ Q  N DK  +
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNV

A0A2N9J109 Uncharacterized protein2.6e-2037.01Show/hide
Query:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNVHGSF
        M K+GF+  +I+ IM C+ +V +S LING P   F P RG+RQGDPLSPYLF++C+ED SL+F +AS  E + I  +L +YE A+ Q  N DK +++ S 
Subjt:  MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNVHGSF

Query:  DL-----QSLQINFNLRSLEGLFTFEGFSWMIEVDFRLQKLRSSESCSRIWTSI
        +      +++++  N+ +++    + G    I    R +K   S+   R+W+ +
Subjt:  DL-----QSLQINFNLRSLEGLFTFEGFSWMIEVDFRLQKLRSSESCSRIWTSI

SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012502.1e-0668.75Show/hide
Query:  LINGSPQDTFRPRRGLRQGDPLSPYLFLICSE
        +ING+PQ    P RGLRQGDPLSPYLF++C+E
Subjt:  LINGSPQDTFRPRRGLRQGDPLSPYLFLICSE

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.5e-0768.75Show/hide
Query:  LINGSPQDTFRPRRGLRQGDPLSPYLFLICSE
        +ING+PQ    P RGLRQGDPLSPYLF++C+E
Subjt:  LINGSPQDTFRPRRGLRQGDPLSPYLFLICSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAATGGGTTTCTCAGGGAGTTGGATTGAGCGCATCATGAACTGTGTGGAATCGGTTTTGTTCTCGGGCCTTATTAACGGTTCACCACAAGACACGTTCAGACC
TAGGAGGGGTTTAAGACAAGGAGATCCTCTATCTCCTTACTTATTCTTGATTTGCAGTGAAGATGCCAGTTTAATCTTCTTCAAAGCATCTATGGAAGAGGGGGAAAAGA
TCATGGAGGTCCTAGAAGTCTACGAGAAAGCTACATGCCAAAATACAAACTTGGACAAAGTCAATGTGCATGGTAGCTTTGATCTACAAAGTCTTCAAATAAACTTTAAT
CTTCGGAGTCTTGAAGGTTTGTTCACCTTTGAAGGATTCTCCTGGATGATTGAAGTAGACTTCAGGCTTCAAAAGCTTCGATCTTCAGAGTCTTGCAGCAGGATCTGGAC
TTCAATCTTCAAGATTCTTGCAGGAGGAACGGAGCTTCAATCTTCAAATCTTGTAGAAGGGATGGAGCTTCAGTCTTCAAATCTTGTAGGAGGATCAGAGCTTCAGTCTT
CAGAGTCTTCTGAGAGCTTCAATCTTCTGCCGCCCCTTCCAAATGAGCCAATGACTCCTATTTATAGAGTTCCCAACGACTTTAATGGGCTTGGGCTTAAATTGGGCTTG
GGCCCATTTATGGGCCTGGATGAATTTTTTGTCTTGAATCTCTCAGAACCGGCAATTTCAGAAGTCCTCGCTGATCAGTTAACTTATTGCCGAGGAAAACAAATGCGTGA
GTCCAAAGAGAAAGAGATGGAGATTATGAGGGACCGTTGTTGCGCTTGTGGGTACCGCCTTGTCGAGGCCGCTTACGGCGTGCGGATGAAGTTGTCCACCGTCAATCTTA
TCTTGAAGATGAAGCGAAGTCGAAACTGTCAACTACGAAGATGGAGCAAAGTCGAAGCTGTCAACTATGAAGATGAAGATGACAAGCAAGACCAAGGCAGAGTATACGGT
GCACATCATTTGGAGATGCAAATTTTCGAGAAAGGTGCTGGAGGGCTGGGGTGGAGCATCCGTGACTCTAGTGGTTCTCTGATTGGAGCGGGTTGCGAAAGAATTTTTCA
GAAAGGGACGATCAAAGTTCTTGAAGCAAAAGCAATGCTGGAAGGGTTGAAGCAAAAGCAATGCTGGAAGGTGAAGACCCTTAATCGAGAAGTGGAAGATCTTTCCGAAA
TTTCCATGGTGATCGGAGAAATCGAGTCAGTCGCTCGGGCTGCTAATGTCTCCTCTTTCTCCAAATGCTCGAGATTGGAGAATAAGGAAGCTCACGATCTTGCGCGTGCT
GCAATTGAAAATAACGATTTTTTTCTGGATGCTATTATCCCTAATTGGTTACCTTCAGTTATTCATGAAGAGGATCCATCTGTGTCTCACTTGTTCTTTGTAGATGATAG
CTTGCTGTTTTTCTGGGCAAAGGAAAGTGGGTCCAAGCACAGAGATGGGTGTGCAGAAGAGGGTGAGTCAGATGCTTCAGGTGCAGTTGACAGCTTCCATTGGCAGTATA
TGGGTCTCCCGTCATTTATGCCCCGTGGGAGGAAAGTTCTTCTCAAATCTATTGTCCAGGCTATCTCATGCTACTTTGTGAACTACTTTAGGCTTCCTAAGAAGCTAATT
CTGGAGATAAATCGATTAATGGCTCGGTTCTGGGATTTGAAGATCTTTAATCAAGCACAATTGGCTAAACATGAGTGGAGAATTATTCAACAACCAACATCCTTTCTTGG
GCGAGTTTTGAAAGGAAGGATCGGGTCCCCTCCTTCGTTGGCTTTGGAGACTCGGGTGGTTGATCTATTGATGACATCGAGGCAATGGAATGAATGCCTTCTTCACCAAC
ATTTCAACCCTCATGAGGGGGAATTTGTGATCTTGTTGTGGGCAATTTGGTGTAGTAGGAACCTGTTGCAGTGGAAGGGTGGGATAGCGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAATGGGTTTCTCAGGGAGTTGGATTGAGCGCATCATGAACTGTGTGGAATCGGTTTTGTTCTCGGGCCTTATTAACGGTTCACCACAAGACACGTTCAGACC
TAGGAGGGGTTTAAGACAAGGAGATCCTCTATCTCCTTACTTATTCTTGATTTGCAGTGAAGATGCCAGTTTAATCTTCTTCAAAGCATCTATGGAAGAGGGGGAAAAGA
TCATGGAGGTCCTAGAAGTCTACGAGAAAGCTACATGCCAAAATACAAACTTGGACAAAGTCAATGTGCATGGTAGCTTTGATCTACAAAGTCTTCAAATAAACTTTAAT
CTTCGGAGTCTTGAAGGTTTGTTCACCTTTGAAGGATTCTCCTGGATGATTGAAGTAGACTTCAGGCTTCAAAAGCTTCGATCTTCAGAGTCTTGCAGCAGGATCTGGAC
TTCAATCTTCAAGATTCTTGCAGGAGGAACGGAGCTTCAATCTTCAAATCTTGTAGAAGGGATGGAGCTTCAGTCTTCAAATCTTGTAGGAGGATCAGAGCTTCAGTCTT
CAGAGTCTTCTGAGAGCTTCAATCTTCTGCCGCCCCTTCCAAATGAGCCAATGACTCCTATTTATAGAGTTCCCAACGACTTTAATGGGCTTGGGCTTAAATTGGGCTTG
GGCCCATTTATGGGCCTGGATGAATTTTTTGTCTTGAATCTCTCAGAACCGGCAATTTCAGAAGTCCTCGCTGATCAGTTAACTTATTGCCGAGGAAAACAAATGCGTGA
GTCCAAAGAGAAAGAGATGGAGATTATGAGGGACCGTTGTTGCGCTTGTGGGTACCGCCTTGTCGAGGCCGCTTACGGCGTGCGGATGAAGTTGTCCACCGTCAATCTTA
TCTTGAAGATGAAGCGAAGTCGAAACTGTCAACTACGAAGATGGAGCAAAGTCGAAGCTGTCAACTATGAAGATGAAGATGACAAGCAAGACCAAGGCAGAGTATACGGT
GCACATCATTTGGAGATGCAAATTTTCGAGAAAGGTGCTGGAGGGCTGGGGTGGAGCATCCGTGACTCTAGTGGTTCTCTGATTGGAGCGGGTTGCGAAAGAATTTTTCA
GAAAGGGACGATCAAAGTTCTTGAAGCAAAAGCAATGCTGGAAGGGTTGAAGCAAAAGCAATGCTGGAAGGTGAAGACCCTTAATCGAGAAGTGGAAGATCTTTCCGAAA
TTTCCATGGTGATCGGAGAAATCGAGTCAGTCGCTCGGGCTGCTAATGTCTCCTCTTTCTCCAAATGCTCGAGATTGGAGAATAAGGAAGCTCACGATCTTGCGCGTGCT
GCAATTGAAAATAACGATTTTTTTCTGGATGCTATTATCCCTAATTGGTTACCTTCAGTTATTCATGAAGAGGATCCATCTGTGTCTCACTTGTTCTTTGTAGATGATAG
CTTGCTGTTTTTCTGGGCAAAGGAAAGTGGGTCCAAGCACAGAGATGGGTGTGCAGAAGAGGGTGAGTCAGATGCTTCAGGTGCAGTTGACAGCTTCCATTGGCAGTATA
TGGGTCTCCCGTCATTTATGCCCCGTGGGAGGAAAGTTCTTCTCAAATCTATTGTCCAGGCTATCTCATGCTACTTTGTGAACTACTTTAGGCTTCCTAAGAAGCTAATT
CTGGAGATAAATCGATTAATGGCTCGGTTCTGGGATTTGAAGATCTTTAATCAAGCACAATTGGCTAAACATGAGTGGAGAATTATTCAACAACCAACATCCTTTCTTGG
GCGAGTTTTGAAAGGAAGGATCGGGTCCCCTCCTTCGTTGGCTTTGGAGACTCGGGTGGTTGATCTATTGATGACATCGAGGCAATGGAATGAATGCCTTCTTCACCAAC
ATTTCAACCCTCATGAGGGGGAATTTGTGATCTTGTTGTGGGCAATTTGGTGTAGTAGGAACCTGTTGCAGTGGAAGGGTGGGATAGCGAAATAG
Protein sequenceShow/hide protein sequence
MAKMGFSGSWIERIMNCVESVLFSGLINGSPQDTFRPRRGLRQGDPLSPYLFLICSEDASLIFFKASMEEGEKIMEVLEVYEKATCQNTNLDKVNVHGSFDLQSLQINFN
LRSLEGLFTFEGFSWMIEVDFRLQKLRSSESCSRIWTSIFKILAGGTELQSSNLVEGMELQSSNLVGGSELQSSESSESFNLLPPLPNEPMTPIYRVPNDFNGLGLKLGL
GPFMGLDEFFVLNLSEPAISEVLADQLTYCRGKQMRESKEKEMEIMRDRCCACGYRLVEAAYGVRMKLSTVNLILKMKRSRNCQLRRWSKVEAVNYEDEDDKQDQGRVYG
AHHLEMQIFEKGAGGLGWSIRDSSGSLIGAGCERIFQKGTIKVLEAKAMLEGLKQKQCWKVKTLNREVEDLSEISMVIGEIESVARAANVSSFSKCSRLENKEAHDLARA
AIENNDFFLDAIIPNWLPSVIHEEDPSVSHLFFVDDSLLFFWAKESGSKHRDGCAEEGESDASGAVDSFHWQYMGLPSFMPRGRKVLLKSIVQAISCYFVNYFRLPKKLI
LEINRLMARFWDLKIFNQAQLAKHEWRIIQQPTSFLGRVLKGRIGSPPSLALETRVVDLLMTSRQWNECLLHQHFNPHEGEFVILLWAIWCSRNLLQWKGGIAK