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Lag0001312 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001312
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:29176541..29176924
RNA-Seq ExpressionLag0001312
SyntenyLag0001312
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEY29637.1 ribonuclease H-like domain-containing protein [Tanacetum cinerariifolium]2.5e-0640.83Show/hide
Query:  IQSQSTPSSSPPQLSTDPTLIPT---TPASPLTGPSTDISPSPSLQASPPPPPPPPPTGANQHHMMTRAKHGIFKP----NAYVTDVSLLYKDTKPPNVK
        + + ++P  +PPQ +    L  T   TP +PL+ PS   +P+P    +PPPPPPPPPT   QHHM+TR+K  I K     N +VT  S +     P ++ 
Subjt:  IQSQSTPSSSPPQLSTDPTLIPT---TPASPLTGPSTDISPSPSLQASPPPPPPPPPTGANQHHMMTRAKHGIFKP----NAYVTDVSLLYKDTKPPNVK

Query:  EALKSSHWFKAMKEEYDALI
         AL+ S+W +AM +EY ALI
Subjt:  EALKSSHWFKAMKEEYDALI

KAA0063212.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.3e-0652.73Show/hide
Query:  HHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK
        H M+TR+K+GIFKP A++ D    Y  T+P N KEA K  HW KAM+E+++AL K
Subjt:  HHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK

KAE8735347.1 hypothetical protein F3Y22_tig00000340pilonHSYRG00249 [Hibiscus syriacus]4.3e-0648.39Show/hide
Query:  PPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK
        P T +N H MMTR+KHGI+KP  Y    ++   D +P N+ EAL S HW +A + EYDAL++
Subjt:  PPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK

KAE8735348.1 hypothetical protein F3Y22_tig00000340pilonHSYRG00251 [Hibiscus syriacus]4.3e-0648.39Show/hide
Query:  PPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK
        P T +N H MMTR+KHGI+KP  Y    ++   D +P N+ EAL S HW +A + EYDAL++
Subjt:  PPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK

PRQ50961.1 putative RNA-directed DNA polymerase [Rosa chinensis]9.5e-0639.85Show/hide
Query:  SQSTPSSSPPQLSTDPTLIPT---TPASPLTG-PSTDI--SPSPSLQASPPPPPPP--------PPTGANQHHMMTRAKHGIFKPNAYVTD---VSLLYK
        SQ T +S P  L   P  +PT   TP+ PL   P+T    +PSP   + PPPPPPP        PP G   H+M TR K GI KP A++T    V ++  
Subjt:  SQSTPSSSPPQLSTDPTLIPT---TPASPLTG-PSTDI--SPSPSLQASPPPPPPP--------PPTGANQHHMMTRAKHGIFKPNAYVTD---VSLLYK

Query:  DTKPPNVK----EALKSSHWFKAMKEEYDALIK
         + PP +     +A K  +W  AMKEE  AL K
Subjt:  DTKPPNVK----EALKSSHWFKAMKEEYDALIK

TrEMBL top hitse value%identityAlignment
A0A251TUQ9 Putative zinc finger, CCHC-type4.2e-0738.17Show/hide
Query:  MLLPSPESIQSQSTPSSSPPQLSTDPTLIPTTPASPLTGPSTDISPSPSLQASPPPPPPPPPTGANQHHMMTRAKHGIFKPNAYVTDVS---------LL
        M  P P     ++TPSS PP  +       TTP SPL+ P T  SP+  + +  P PPPPPP     H M+TRAK G+F+P  ++ D+S          L
Subjt:  MLLPSPESIQSQSTPSSSPPQLSTDPTLIPTTPASPLTGPSTDISPSPSLQASPPPPPPPPPTGANQHHMMTRAKHGIFKPNAYVTDVS---------LL

Query:  YKDTKPPNVKEALKSSHWFKAMKEEYDALIK
        +    P   K A+K + W  AM +E DAL K
Subjt:  YKDTKPPNVKEALKSSHWFKAMKEEYDALIK

A0A2N9F7W8 Integrase catalytic domain-containing protein3.5e-0635.66Show/hide
Query:  PSPESIQSQS------TPSSSPPQLSTDPTLIPTTPASPLTGPSTDISPSPS-LQASPPPPPPPPPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTK
        P+P S  +QS         SS P  +  P   P +  +P   P++ ++PSP+ +   P  P P P    N H M TR+KHGIFKP        L Y   +
Subjt:  PSPESIQSQS------TPSSSPPQLSTDPTLIPTTPASPLTGPSTDISPSPS-LQASPPPPPPPPPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTK

Query:  PPNVKEALKSSHWFKAMKEEYDALIKMIL
        PP+ K A + S W +AM++EYD+LI+ ++
Subjt:  PPNVKEALKSSHWFKAMKEEYDALIKMIL

A0A2N9FVX2 Integrase catalytic domain-containing protein2.7e-0643.97Show/hide
Query:  TPSSSPPQLSTDPTLIPTTPASPLT-----GPSTDISPSPSLQASPPPPPPPP--PTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKS
        TP  + P      T IP   ++ ++      P T I    S   S P PP PP  PT +N H M TR+KHGIFKP    T   L Y  T+PPN K A + 
Subjt:  TPSSSPPQLSTDPTLIPTTPASPLT-----GPSTDISPSPSLQASPPPPPPPP--PTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKS

Query:  SHWFKAMKEEYDALIK
        S W +AMK+EYDALIK
Subjt:  SHWFKAMKEEYDALIK

A0A2N9IIJ0 Uncharacterized protein3.5e-0644.53Show/hide
Query:  LPSPESIQSQSTPSSSPP--QLSTDPTLIPTTP--ASPLTGPSTDISPSP-----------SLQASPPPPPPPP--PTGANQHHMMTRAKHGIFKPNAYV
        LPS +S+   ST S  P   QL     L   TP  A+P T P+    P+P           S   S P PP PP  PT +N H M TR+KHGIFKP    
Subjt:  LPSPESIQSQSTPSSSPP--QLSTDPTLIPTTP--ASPLTGPSTDISPSP-----------SLQASPPPPPPPP--PTGANQHHMMTRAKHGIFKPNAYV

Query:  TDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK
        T   L Y  T+PPN K A + S W +AMK+EYDALIK
Subjt:  TDVSLLYKDTKPPNVKEALKSSHWFKAMKEEYDALIK

A0A2P6RX14 Putative RNA-directed DNA polymerase4.6e-0639.85Show/hide
Query:  SQSTPSSSPPQLSTDPTLIPT---TPASPLTG-PSTDI--SPSPSLQASPPPPPPP--------PPTGANQHHMMTRAKHGIFKPNAYVTD---VSLLYK
        SQ T +S P  L   P  +PT   TP+ PL   P+T    +PSP   + PPPPPPP        PP G   H+M TR K GI KP A++T    V ++  
Subjt:  SQSTPSSSPPQLSTDPTLIPT---TPASPLTG-PSTDI--SPSPSLQASPPPPPPP--------PPTGANQHHMMTRAKHGIFKPNAYVTD---VSLLYK

Query:  DTKPPNVK----EALKSSHWFKAMKEEYDALIK
         + PP +     +A K  +W  AMKEE  AL K
Subjt:  DTKPPNVK----EALKSSHWFKAMKEEYDALIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACTTCCTTCTCCTGAGTCTATCCAATCTCAATCGACTCCTTCATCCTCTCCTCCTCAATTAAGTACGGATCCTACTCTAATTCCCACCACACCTGCTTCCCCATT
GACAGGTCCTTCCACTGATATTAGTCCCTCACCTAGTCTGCAAGCATCTCCTCCTCCACCTCCTCCTCCACCACCTACGGGTGCCAATCAACATCACATGATGACTCGTG
CAAAACATGGCATTTTTAAGCCAAATGCATATGTCACTGATGTGTCCCTCTTATACAAGGATACTAAGCCACCAAATGTTAAGGAGGCTTTAAAGTCATCACATTGGTTT
AAGGCAATGAAGGAGGAATACGATGCCTTAATAAAAATGATACTTGGGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACTTCCTTCTCCTGAGTCTATCCAATCTCAATCGACTCCTTCATCCTCTCCTCCTCAATTAAGTACGGATCCTACTCTAATTCCCACCACACCTGCTTCCCCATT
GACAGGTCCTTCCACTGATATTAGTCCCTCACCTAGTCTGCAAGCATCTCCTCCTCCACCTCCTCCTCCACCACCTACGGGTGCCAATCAACATCACATGATGACTCGTG
CAAAACATGGCATTTTTAAGCCAAATGCATATGTCACTGATGTGTCCCTCTTATACAAGGATACTAAGCCACCAAATGTTAAGGAGGCTTTAAAGTCATCACATTGGTTT
AAGGCAATGAAGGAGGAATACGATGCCTTAATAAAAATGATACTTGGGACTTAG
Protein sequenceShow/hide protein sequence
MLLPSPESIQSQSTPSSSPPQLSTDPTLIPTTPASPLTGPSTDISPSPSLQASPPPPPPPPPTGANQHHMMTRAKHGIFKPNAYVTDVSLLYKDTKPPNVKEALKSSHWF
KAMKEEYDALIKMILGT