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Lag0001322 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001322
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:29369118..29369432
RNA-Seq ExpressionLag0001322
SyntenyLag0001322
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]4.1e-1554.26Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPI
        +SLKEYF KIQQ VDALA++ KP+ T++HIL+IL+ LG+ ++SM SVIS +    SV +VM+LLLTQE++ ESKI S   SL + N T + + I
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPI

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]6.0e-1449.04Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPIEPDSQK
        MSLKEYF KIQQ VDALA++ KP+ T++HIL+IL+ LG+ ++S+ S+IS +    SV + M+LLLTQE++ ESKI S   SL + N T + + I    ++
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPIEPDSQK

Query:  SNNT
        S  T
Subjt:  SNNT

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-1458.14Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN
        M LKEYF KI Q VDALA++ KPV +++HIL+IL+ LGS ++SM SVIS +    SV EVM+LLLTQE++NESK+ S   +L S N
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]4.1e-1559.74Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIAS
        MSLKEYF KIQQ VDALA++ KPV +++HIL+IL  LG  ++SM S+IS +    S+ EVM+LLLTQE++NESK+ S
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIAS

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.2e-1458.14Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN
        M LKEYF KI Q VDALA++ KPV +++HIL+IL+ LGS ++SM SVIS +    SV EVM+LLLTQE++NESK+ S   +L S N
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN

TrEMBL top hitse value%identityAlignment
A0A5A7TUB3 Putative glutathione S-transferase isoform X12.0e-1554.26Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPI
        +SLKEYF KIQQ VDALA++ KP+ T++HIL+IL+ LG+ ++SM SVIS +    SV +VM+LLLTQE++ ESKI S   SL + N T + + I
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPI

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1558.14Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN
        M LKEYF KI Q VDALA++ KPV +++HIL+IL+ LGS ++SM SVIS +    SV EVM+LLLTQE++NESK+ S   +L S N
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN

A0A5A7UB21 Keratin, type II cytoskeletal 1-like2.0e-1559.74Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIAS
        MSLKEYF KIQQ VDALA++ KPV +++HIL+IL  LG  ++SM S+IS +    S+ EVM+LLLTQE++NESK+ S
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIAS

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-1558.14Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN
        M LKEYF KI Q VDALA++ KPV +++HIL+IL+ LGS ++SM SVIS +    SV EVM+LLLTQE++NESK+ S   +L S N
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSAN

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon2.9e-1449.04Show/hide
Query:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPIEPDSQK
        MSLKEYF KIQQ VDALA++ KP+ T++HIL+IL+ LG+ ++S+ S+IS +    SV + M+LLLTQE++ ESKI S   SL + N T + + I    ++
Subjt:  MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPIEPDSQK

Query:  SNNT
        S  T
Subjt:  SNNT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCAAGGAGTACTTTTCAAAAATTCAGCAGTACGTAGATGCTTTGGCCGCTGTCGGTAAGCCTGTCAAAACTGAGGAACATATTTTATTCATTTTGTCTAGTCT
TGGGTCTACTTTTGAATCGATGACATCTGTGATATCGACCAAAGCTGGCCCCCAATCTGTTTATGAGGTTATGGCTCTTTTGTTAACACAAGAAAATCGAAATGAGAGTA
AAATTGCTAGTCCAAATGGTTCTCTCTCCTCTGCTAATCGTACGATTAATTACAAACCGATTGAGCCTGATTCTCAAAAGTCTAACAACACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCAAGGAGTACTTTTCAAAAATTCAGCAGTACGTAGATGCTTTGGCCGCTGTCGGTAAGCCTGTCAAAACTGAGGAACATATTTTATTCATTTTGTCTAGTCT
TGGGTCTACTTTTGAATCGATGACATCTGTGATATCGACCAAAGCTGGCCCCCAATCTGTTTATGAGGTTATGGCTCTTTTGTTAACACAAGAAAATCGAAATGAGAGTA
AAATTGCTAGTCCAAATGGTTCTCTCTCCTCTGCTAATCGTACGATTAATTACAAACCGATTGAGCCTGATTCTCAAAAGTCTAACAACACTTAA
Protein sequenceShow/hide protein sequence
MSLKEYFSKIQQYVDALAAVGKPVKTEEHILFILSSLGSTFESMTSVISTKAGPQSVYEVMALLLTQENRNESKIASPNGSLSSANRTINYKPIEPDSQKSNNT