CuGenDBv2

Gene ID	Lag0001365
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Sister chromatid cohesion protein
Genome location	chr4:30265134..30265742
RNA-Seq Expression	Lag0001365
Synteny	Lag0001365
Gene Ontology terms	GO:0010468 - regulation of gene expression (biological process) GO:0061780 - mitotic cohesin loading (biological process) GO:0005634 - nucleus (cellular component) GO:0003682 - chromatin binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607103.1 Sister chromatid cohesion protein SCC2, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-28

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

XP_022948643.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata]

1.8e-28

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

XP_022998260.1 sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima]

1.8e-28

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

XP_022998261.1 sister chromatid cohesion protein SCC2 isoform X2 [Cucurbita maxima]

1.8e-28

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

XP_038880409.1 sister chromatid cohesion protein SCC2 isoform X1 [Benincasa hispida]

1.4e-28

81.4

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M LPPS S SASASG  +RGIGLSNTIHSEVAPCLPLPSLPVFFG+ EP+LRLFDEP G +AT  TD+L+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CTA5 Sister chromatid cohesion protein

2.6e-28

69.61

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Query:  MTLPPSTS---GSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVA
        M+LP S++   GS S SG  HRGIGLSNTIHSEVAPCLPLPSLPVFFG+ E ELRLFDEP G +AT   DVL+QSKKIADLLRATDVSY    E  E ++
Subjt:  MTLPPSTS---GSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVA

Query:  GG
         G
Subjt:  GG

A0A6J1CTQ8 Sister chromatid cohesion protein

2.6e-28

69.61

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Query:  MTLPPSTS---GSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVA
        M+LP S++   GS S SG  HRGIGLSNTIHSEVAPCLPLPSLPVFFG+ E ELRLFDEP G +AT   DVL+QSKKIADLLRATDVSY    E  E ++
Subjt:  MTLPPSTS---GSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVA

Query:  GG
         G
Subjt:  GG

A0A6J1G9V6 Sister chromatid cohesion protein

8.9e-29

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

A0A6J1K9S4 Sister chromatid cohesion protein

8.9e-29

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

A0A6J1KC20 Sister chromatid cohesion protein

8.9e-29

82.56

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Query:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY
        M+LPP  S SAS SG   RGIGLSNTIHSEVAPCLPLPSLPV FG+ EPELRLFDEPAG +ATLR+DVL+QSKKIADLLRATDVSY
Subjt:  MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSY

SwissProt top hits

e value

%identity

Alignment

A5HEI1 Sister chromatid cohesion protein SCC2

1.3e-16

54.65

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Query:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY
        PS+SG  S+SG  H GIGL+NT+ SEV P LPLPSLP+F G+ EP E +LFDE    +G  +  R+++L+QS +IA++L  TDVSY
Subjt:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY

Arabidopsis top hits

e value

%identity

Alignment

AT5G15540.1 PHD finger family protein

9.1e-18

54.65

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Query:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY
        PS+SG  S+SG  H GIGL+NT+ SEV P LPLPSLP+F G+ EP E +LFDE    +G  +  R+++L+QS +IA++L  TDVSY
Subjt:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY

AT5G15540.2 PHD finger family protein

9.1e-18

54.65

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Query:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY
        PS+SG  S+SG  H GIGL+NT+ SEV P LPLPSLP+F G+ EP E +LFDE    +G  +  R+++L+QS +IA++L  TDVSY
Subjt:  PSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEP-ELRLFDE---PAGDHATLRTDVLSQSKKIADLLRATDVSY

Sequences

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CDS sequence

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ATGACTTTGCCGCCCTCCACTTCCGGCTCCGCCTCCGCCTCCGGCCCCGCCCACCGCGGTATCGGTTTGTCCAATACTATTCACTCCGAGGTTGCTCCCTGCTTGCCTTT
GCCTTCGCTTCCGGTCTTCTTCGGCTCCTTCGAGCCCGAGCTCCGGCTCTTCGATGAGCCGGCTGGGGACCATGCTACTTTGAGGACTGATGTTCTCTCTCAGTCTAAGA
AGATCGCTGATCTGCTTCGTGCTACTGACGTCTCTTACTTTCCGGCGCCGGAGACGGAGGAGGGAGTCGCCGGCGGCGGCGGCGGCGGCGTGTGGTGGCCGCCGGTCGCC
GGACTTAGGAAGAAGAAGAAGGAGGGAGAAGATGGAGAAGAAGGAAGATGTAGAATAAGGAGATGA

mRNA sequence

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Protein sequence

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MTLPPSTSGSASASGPAHRGIGLSNTIHSEVAPCLPLPSLPVFFGSFEPELRLFDEPAGDHATLRTDVLSQSKKIADLLRATDVSYFPAPETEEGVAGGGGGGVWWPPVA
GLRKKKKEGEDGEEGRCRIRR

Lag0001365 (gene) of Sponge gourd (AG-4) v1 genome