CuGenDBv2

Gene ID	Lag0001381
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S13
Genome location	chr4:30574484..30575122
RNA-Seq Expression	Lag0001381
Synteny	Lag0001381
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

KAE9606905.1 putative ribosomal protein S15 [Lupinus albus]

5.8e-18

72.73

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Query:  MNFVNVIGLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        +  +   GLAPEIPEDLYHLIK+ VSIRKHLERNRKDKDSKFRLILVESRIH L RY + +K++ P
Subjt:  MNFVNVIGLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

KNF01622.1 40S ribosomal protein S13 [Puccinia striiformis f. sp. tritici PST-78]

3.4e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

OAV95172.1 40S ribosomal protein S13 [Puccinia triticina 1-1 BBBD Race 1]

3.4e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

RYR72167.1 hypothetical protein Ahy_A02g006378 [Arachis hypogaea]

4.4e-18

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Query:  IGLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        IGLAPEIPEDLYHLIK+ VSIRKHLERNRKDKDSKF+LILVESRIH +TRY +  K++ P
Subjt:  IGLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

XP_003330125.1 40S ribosomal protein S13 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]

3.4e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

TrEMBL top hits

e value

%identity

Alignment

A0A0C4EUE7 40S ribosomal protein S13

1.6e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

A0A0L0VQZ2 40S ribosomal protein S13

1.6e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

A0A2S4W371 Ribosomal_S13_N domain-containing protein

1.6e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

A0A5B0PQ24 Ribosomal 40S subunit protein S13

1.6e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

E3KN70 40S ribosomal protein S13

1.6e-18

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VS+RKHLERNRKDKDSKFRLIL+ESRIH LTRY +   ++SP
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

1.9e-19

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VSIRKHLER RKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

P59223 40S ribosomal protein S13-1

3.8e-20

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ V+IRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

P59224 40S ribosomal protein S13-2

3.8e-20

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ V+IRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

P62302 40S ribosomal protein S13

1.7e-20

81.36

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ VSIRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

Q69UI2 40S ribosomal protein S13-1

4.2e-19

77.97

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLY LIK+ V+IRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

2.7e-21

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ V+IRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

AT4G00100.1 ribosomal protein S13A

2.7e-21

79.66

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Query:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP
        GLAPEIPEDLYHLIK+ V+IRKHLERNRKDKDSKFRLILVESRIH L RY +  K++ P
Subjt:  GLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSP

Sequences

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CDS sequence

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ATGAACTTTGTTAATGTTATTGGACTAGCTCCTGAAATCCCAGAGGATCTTTACCATCTCATTAAAGAAGTTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGA
CAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGTAGGATCCATGGCCTGACCCGGTATGTACAAGCAGACAAAGAAGTTTCTCCCTGCTTGGAAGTTGTCTTGTACT
TTTTGGAATTGTTCATATGGGTTGATAGTTATAATTTTGGAATTGCTCATATGGAGGTTGTATACTTTTGTAATGTTGAAGATATGAATTTTATTGAAGTTATTGGAAGA
AATTTGGTTGATGGATCTTGA

mRNA sequence

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Protein sequence

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MNFVNVIGLAPEIPEDLYHLIKEVVSIRKHLERNRKDKDSKFRLILVESRIHGLTRYVQADKEVSPCLEVVLYFLELFIWVDSYNFGIAHMEVVYFCNVEDMNFIEVIGR
NLVDGS

Lag0001381 (gene) of Sponge gourd (AG-4) v1 genome