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Lag0001394 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001394
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:30738933..30741684
RNA-Seq ExpressionLag0001394
SyntenyLag0001394
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS31826.1 hypothetical protein Acr_00g0019390 [Actinidia rufa]5.2e-2639.5Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG---WPRPSLTKDGRDKEEPL-------------RRSESSLE
        M+S  ++R  +++C FH+DHGH T +C  LK ++E LI+ G L  F+  G P  + DH      R SL K+ +  ++P+               S  S +
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG---WPRPSLTKDGRDKEEPL-------------RRSESSLE

Query:  DQLKEVRVGRGKLLPGKR------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPE
           +E+R  +  +  G+             GF G+RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L+E KAI STYH  +KFPT +
Subjt:  DQLKEVRVGRGKLLPGKR------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPE

XP_022144467.1 uncharacterized protein LOC111014147 [Momordica charantia]1.5e-3344.02Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADHGWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKE
        MK+ + +R  S+YCLFHR HGH+T++C  LK+E+E LI+ GYLKE+V EP+A    E+D    R        P   + GR ++  +R + +  E +++  
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADHGWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKE

Query:  VRVGR-----GKLLP------------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTY
        V+V R     G L              G++          GFGGERV PEG IE PVTFG G   VTKM++ LVV+  S+YNAILGRPT+H ++AI STY
Subjt:  VRVGR-----GKLLP------------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTY

Query:  HQLLKFPTP
        HQ +KFPTP
Subjt:  HQLLKFPTP

XP_022150858.1 uncharacterized protein LOC111018902 [Momordica charantia]4.2e-2838.97Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEV------------
        MK+   +R   +YC FH DH H+T++C  LK+E+E LIQ GYLKE+V +P+A  +    +         +E+P +     LED++  +            
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEV------------

Query:  RVGRGK----------------------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAI
        ++   K                      +  G+R          GFGGE V PEG IELPVTFG G   +TKM++FLVVD  S+ NAILGRPT+H +KAI
Subjt:  RVGRGK----------------------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAI

Query:  ASTYHQLLKFPTP
         S YHQ +KFPTP
Subjt:  ASTYHQLLKFPTP

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]2.1e-2737.22Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDG-RDKEEPLRRSESSLEDQ---------------
        MK+   +R   QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +P+A           T++G  D   P+R   + +E+Q               
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDG-RDKEEPLRRSESSLEDQ---------------

Query:  ------------LKEVRVGRGKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAIL
                    +   +V R  +  G                             GFGGERV PEG IELPV FG G   + KM++FLVV   S+YN IL
Subjt:  ------------LKEVRVGRGKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAIL

Query:  GRPTLHEMKAIASTYHQLLKFPT
        GRP +H +K I STYHQ +KFPT
Subjt:  GRPTLHEMKAIASTYHQLLKFPT

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]4.7e-2740.93Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPRA-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---L
        MK+ + +R   +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE          V E RA     E  H +   RP   +   D+   L  S +    +
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPRA-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---L

Query:  EDQLKEVRVGR-----------------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMK
          ++  V+V R                        K+L        GFGGERV  EG IELPVTFG G   VTKM++FLVV+  S+YN ILGR T+H +K
Subjt:  EDQLKEVRVGR-----------------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMK

Query:  AIASTYHQLLKFPTP
         I STYHQ +KFPTP
Subjt:  AIASTYHQLLKFPTP

TrEMBL top hitse value%identityAlignment
A0A6J1CTS4 uncharacterized protein LOC1110141477.3e-3444.02Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADHGWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKE
        MK+ + +R  S+YCLFHR HGH+T++C  LK+E+E LI+ GYLKE+V EP+A    E+D    R        P   + GR ++  +R + +  E +++  
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADHGWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKE

Query:  VRVGR-----GKLLP------------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTY
        V+V R     G L              G++          GFGGERV PEG IE PVTFG G   VTKM++ LVV+  S+YNAILGRPT+H ++AI STY
Subjt:  VRVGR-----GKLLP------------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTY

Query:  HQLLKFPTP
        HQ +KFPTP
Subjt:  HQLLKFPTP

A0A6J1DAK4 uncharacterized protein LOC1110189022.1e-2838.97Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEV------------
        MK+   +R   +YC FH DH H+T++C  LK+E+E LIQ GYLKE+V +P+A  +    +         +E+P +     LED++  +            
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEV------------

Query:  RVGRGK----------------------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAI
        ++   K                      +  G+R          GFGGE V PEG IELPVTFG G   +TKM++FLVVD  S+ NAILGRPT+H +KAI
Subjt:  RVGRGK----------------------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAI

Query:  ASTYHQLLKFPTP
         S YHQ +KFPTP
Subjt:  ASTYHQLLKFPTP

A0A6J1DP33 uncharacterized protein LOC1110228861.0e-2737.22Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDG-RDKEEPLRRSESSLEDQ---------------
        MK+   +R   QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +P+A           T++G  D   P+R   + +E+Q               
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDG-RDKEEPLRRSESSLEDQ---------------

Query:  ------------LKEVRVGRGKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAIL
                    +   +V R  +  G                             GFGGERV PEG IELPV FG G   + KM++FLVV   S+YN IL
Subjt:  ------------LKEVRVGRGKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAIL

Query:  GRPTLHEMKAIASTYHQLLKFPT
        GRP +H +K I STYHQ +KFPT
Subjt:  GRPTLHEMKAIASTYHQLLKFPT

A0A6J1DRG9 uncharacterized protein LOC1110235872.3e-2740.93Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPRA-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---L
        MK+ + +R   +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE          V E RA     E  H +   RP   +   D+   L  S +    +
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPRA-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---L

Query:  EDQLKEVRVGR-----------------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMK
          ++  V+V R                        K+L        GFGGERV  EG IELPVTFG G   VTKM++FLVV+  S+YN ILGR T+H +K
Subjt:  EDQLKEVRVGR-----------------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMK

Query:  AIASTYHQLLKFPTP
         I STYHQ +KFPTP
Subjt:  AIASTYHQLLKFPTP

A0A7J0DBQ5 Retrotrans_gag domain-containing protein2.5e-2639.5Show/hide
Query:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG---WPRPSLTKDGRDKEEPL-------------RRSESSLE
        M+S  ++R  +++C FH+DHGH T +C  LK ++E LI+ G L  F+  G P  + DH      R SL K+ +  ++P+               S  S +
Subjt:  MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG---WPRPSLTKDGRDKEEPL-------------RRSESSLE

Query:  DQLKEVRVGRGKLLPGKR------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPE
           +E+R  +  +  G+             GF G+RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L+E KAI STYH  +KFPT +
Subjt:  DQLKEVRVGRGKLLPGKR------------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCGAGTGCCGATAGAAGAGACACGAGCCAGTATTGTCTTTTCCACCGGGACCACGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACT
AATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCTAGGGCCGAGGCCGACCACGGATGGCCGAGGCCGAGCCTCACCAAAGATGGCCGAGACAAAGAAGAACCCC
TACGGAGATCAGAATCATCTTTGGAGGACCAGCTGAAGGAGGTTCGAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGCGGGGATTTGGGGGAGAGAGAGTGACCCCAGAA
GGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGTAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAG
ACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGGAACGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAA
GGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTC
TGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACTTCCTCTG
GCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGC
CTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCT
GAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATATGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGA
GCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGCGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCA
TCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCA
TGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCCTTACATCAGGCGAGCCTGGACTGCCGAGTCTACCTCGCCTCATCCAAAGATGACAACAAA
GCTACACATAAGCCAGCCCAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAATAAGTCACCTCGAATCCCAATTCAAGAGTGGGGCTTAA
TGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCGAGTGCCGATAGAAGAGACACGAGCCAGTATTGTCTTTTCCACCGGGACCACGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACT
AATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCTAGGGCCGAGGCCGACCACGGATGGCCGAGGCCGAGCCTCACCAAAGATGGCCGAGACAAAGAAGAACCCC
TACGGAGATCAGAATCATCTTTGGAGGACCAGCTGAAGGAGGTTCGAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGCGGGGATTTGGGGGAGAGAGAGTGACCCCAGAA
GGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGTAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAG
ACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGGAACGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAA
GGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTC
TGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACTTCCTCTG
GCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGC
CTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCT
GAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATATGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGA
GCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGCGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCA
TCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCA
TGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCCTTACATCAGGCGAGCCTGGACTGCCGAGTCTACCTCGCCTCATCCAAAGATGACAACAAA
GCTACACATAAGCCAGCCCAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAATAAGTCACCTCGAATCCCAATTCAAGAGTGGGGCTTAA
TGGCTTAA
Protein sequenceShow/hide protein sequence
MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEVRVGRGKLLPGKRGFGGERVTPE
GSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPERFTIKVQYSGVCTRQPTQASRHASLDYRVYLASSRVRPCEPGPTSLPHLL
WPEHLYTRRAWTAEVYLASSRVRPCEPGPTSLPHFLWPEHLYSRRAWTAEVYLASSRVRPCEPGPTSLPHLLWPEHLYTRRAWTAEVYLASSRVRPCEPGPTSLPHLLWP
EHLYSRRAWTAEVYLASSRVRPYEPGPTSLPHLLWPEHLTPGEPGLPKSTSPHPECDHVSLDQRVYLTSSGLSILHQASLDCRSLPRLIQSETMRAWTAEVYLASSRVRP
CEPGPTSLPHLLWPEHPYIRRAWTAESTSPHPKMTTKLHISQPKARVITLKSGLRSSTYSNKSPRIPIQEWGLMA