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Lag0001395 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001395
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr4:30741726..30742843
RNA-Seq ExpressionLag0001395
SyntenyLag0001395
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015383577.1 uncharacterized protein LOC107176071 [Citrus sinensis]5.7e-1532.76Show/hide
Query:  VKGLGDQNLEELADQVDPPFTEEVMKA---------------------------EKWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQ
        V+G+G Q  +++  + +PPFT+E+M+A                              M+  GVS AI CRAF  TL+G+AR WF RL+  SIS F EL +
Subjt:  VKGLGDQNLEELADQVDPPFTEEVMKA---------------------------EKWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQ

Query:  AFLAQFMGAREQRKPHINLLTVKQQPGKSQPRTYA----------------------EFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQ--
         F   F  AR++ KP   LLTVKQ  G+S  R Y                       + +SRA+KY +AEE  +SKK     K   S N   K+D+R   
Subjt:  AFLAQFMGAREQRKPHINLLTVKQQPGKSQPRTYA----------------------EFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQ--

Query:  --RTDEGGRARPDQTKEHLLSVSLKNTPQLLF
          R D+  R    + ++ L S   ++ P + F
Subjt:  --RTDEGGRARPDQTKEHLLSVSLKNTPQLLF

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]4.7e-1738.19Show/hide
Query:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------
        +WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R + +P   LLT+KQ+                              
Subjt:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------

Query:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSKY
                      GK  P T++E +SRAQKYMSA E   SK+ E E K+ S  N +   DK Q +    R   D++   +   +LKN  QL F  SKY
Subjt:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSKY

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.1e-1737Show/hide
Query:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------
        +W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ QF+G R + KP   LLT+KQ+                              
Subjt:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------

Query:  --------------GKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKR-QRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSK
                      GK  P T+ E +SRAQKYMSA EL+  S+  ERE      +NY +K+++R ++       R D     L    ++  PQL F +S+
Subjt:  --------------GKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKR-QRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSK

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.2e-1833.78Show/hide
Query:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM
        +LEEL DQ D PFTEE+M+ +                           +WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+
Subjt:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM

Query:  GAREQRKPHINLLTVKQQP-------------------------------------------GKSQPRTYAEFVSRAQKYMSAEELLKS------KKSER
        G R + +P   LLT+KQ+                                            GK  P T++E +SRAQ+YMSA E   S      K+++ 
Subjt:  GAREQRKPHINLLTVKQQP-------------------------------------------GKSQPRTYAEFVSRAQKYMSAEELLKS------KKSER

Query:  EYKRFSSSNYDSKKDKRQRTDE
        + +R       S+ +KR R+ +
Subjt:  EYKRFSSSNYDSKKDKRQRTDE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.6e-1734.25Show/hide
Query:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM
        +LEEL  Q D PFTEE+M+ +                           +WMD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+
Subjt:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM

Query:  GAREQRKPHINLLTVKQQPGKS-------------------------------------------QPRTYAEFVSRAQKYMSAEELLKS------KKSER
        G R + +P   LLT+KQ+  +S                                            P T++E +SRAQ+YMSA E   S      K++++
Subjt:  GAREQRKPHINLLTVKQQPGKS-------------------------------------------QPRTYAEFVSRAQKYMSAEELLKS------KKSER

Query:  EYKRFSSSNYDSKKDKRQR
        + +R       S+ +KR R
Subjt:  EYKRFSSSNYDSKKDKRQR

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.5e-1335.71Show/hide
Query:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------
        +W D +G+++AIRCR F FTLTGS R WF++LKR+SIS FKELA+AF+ QF G   + +P   LLT+KQ+                              
Subjt:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------

Query:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDE
                      GK    T++E  SRAQ YMS  EL+ SK+  +         Y     KR+R  E
Subjt:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDE

A0A6J1D7D2 uncharacterized protein LOC1110183072.3e-1738.19Show/hide
Query:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------
        +WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R + +P   LLT+KQ+                              
Subjt:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------

Query:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSKY
                      GK  P T++E +SRAQKYMSA E   SK+ E E K+ S  N +   DK Q +    R   D++   +   +LKN  QL F  SKY
Subjt:  --------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSKY

A0A6J1DWY0 uncharacterized protein LOC1110252932.0e-1833.78Show/hide
Query:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM
        +LEEL DQ D PFTEE+M+ +                           +WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+
Subjt:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM

Query:  GAREQRKPHINLLTVKQQP-------------------------------------------GKSQPRTYAEFVSRAQKYMSAEELLKS------KKSER
        G R + +P   LLT+KQ+                                            GK  P T++E +SRAQ+YMSA E   S      K+++ 
Subjt:  GAREQRKPHINLLTVKQQP-------------------------------------------GKSQPRTYAEFVSRAQKYMSAEELLKS------KKSER

Query:  EYKRFSSSNYDSKKDKRQRTDE
        + +R       S+ +KR R+ +
Subjt:  EYKRFSSSNYDSKKDKRQRTDE

A0A6J1DZ49 uncharacterized protein LOC1110248511.0e-1737Show/hide
Query:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------
        +W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ QF+G R + KP   LLT+KQ+                              
Subjt:  KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQP-----------------------------

Query:  --------------GKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKR-QRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSK
                      GK  P T+ E +SRAQKYMSA EL+  S+  ERE      +NY +K+++R ++       R D     L    ++  PQL F +S+
Subjt:  --------------GKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKR-QRTDEGGRARPDQTKEHLLSVSLKNTPQLLFRRSK

A0A6J1E1E7 uncharacterized protein LOC1110255487.8e-1834.25Show/hide
Query:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM
        +LEEL  Q D PFTEE+M+ +                           +WMD +GVSDAIRCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+
Subjt:  NLEELADQVDPPFTEEVMKAE---------------------------KWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFM

Query:  GAREQRKPHINLLTVKQQPGKS-------------------------------------------QPRTYAEFVSRAQKYMSAEELLKS------KKSER
        G R + +P   LLT+KQ+  +S                                            P T++E +SRAQ+YMSA E   S      K++++
Subjt:  GAREQRKPHINLLTVKQQPGKS-------------------------------------------QPRTYAEFVSRAQKYMSAEELLKS------KKSER

Query:  EYKRFSSSNYDSKKDKRQR
        + +R       S+ +KR R
Subjt:  EYKRFSSSNYDSKKDKRQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACACTGCAGAGTCAGAGACAGAAGTGCCAAAACTGCCGAGTCCGAGGCCAAGCGCCGAAGCTGAGCCCGAGGCCGAGGCTAGGCCGAGGCCGAGGCAAGAAAG
ACGACCTCCCTTGGAAGATCGAGCTTCTAAATGCACTAAAGGAGCTCGGAAATCCTCAGGGAGACCAGCAGAAGTCAAAGGACTTGGAGATCAAAACTTGGAAGAACTAG
CCGACCAAGTCGATCCGCCCTTCACAGAAGAAGTCATGAAAGCCGAGAAGTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCATTCTTTTTCACCCTG
ACAGGATCAGCCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAAGAGTTGGCCCAAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAGCAGCG
CAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGT
TACTTAAGTCAAAGAAGTCGGAACGAGAGTACAAGAGGTTTTCTTCATCTAACTACGACAGTAAAAAGGACAAAAGGCAGCGAACCGACGAGGGAGGCCGGGCGAGGCCC
GACCAGACCAAGGAGCACCTCCTTTCGGTAAGTTTGAAAAATACACCCCAACTGCTGTTCCGCAGGAGCAAGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACACTGCAGAGTCAGAGACAGAAGTGCCAAAACTGCCGAGTCCGAGGCCAAGCGCCGAAGCTGAGCCCGAGGCCGAGGCTAGGCCGAGGCCGAGGCAAGAAAG
ACGACCTCCCTTGGAAGATCGAGCTTCTAAATGCACTAAAGGAGCTCGGAAATCCTCAGGGAGACCAGCAGAAGTCAAAGGACTTGGAGATCAAAACTTGGAAGAACTAG
CCGACCAAGTCGATCCGCCCTTCACAGAAGAAGTCATGAAAGCCGAGAAGTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGTGCATTCTTTTTCACCCTG
ACAGGATCAGCCAGGCACTGGTTTGAGAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAAGAGTTGGCCCAAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAGCAGCG
CAAGCCTCACATCAACCTCTTAACAGTCAAACAACAGCCAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGGAGT
TACTTAAGTCAAAGAAGTCGGAACGAGAGTACAAGAGGTTTTCTTCATCTAACTACGACAGTAAAAAGGACAAAAGGCAGCGAACCGACGAGGGAGGCCGGGCGAGGCCC
GACCAGACCAAGGAGCACCTCCTTTCGGTAAGTTTGAAAAATACACCCCAACTGCTGTTCCGCAGGAGCAAGTACTGA
Protein sequenceShow/hide protein sequence
MEHTAESETEVPKLPSPRPSAEAEPEAEARPRPRQERRPPLEDRASKCTKGARKSSGRPAEVKGLGDQNLEELADQVDPPFTEEVMKAEKWMDFHGVSDAIRCRAFFFTL
TGSARHWFERLKRRSISCFKELAQAFLAQFMGAREQRKPHINLLTVKQQPGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRARP
DQTKEHLLSVSLKNTPQLLFRRSKY