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Lag0001404 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001404
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr4:30853452..30854262
RNA-Seq ExpressionLag0001404
SyntenyLag0001404
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR020847 - AP endonuclease 1, binding site
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW13148.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]6.0e-1846.53Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SGGIL++W  K ++  +VV+GSF+VSV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

RVW46837.1 hypothetical protein CK203_075659 [Vitis vinifera]3.5e-1845.1Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        KGLG   KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W++L + G+SGGIL++W  K++   +VV+GSF+VS+ F L+  +  W++AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  YA
        Y+
Subjt:  YA

RVX04307.1 Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]2.7e-1845.54Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W +L + G+SGGIL++W  K ++  +VV+GSF++SV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

RVX11280.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.0e-1846.53Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SGGIL++W  K ++  +VV+GSF+VSV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

XP_034710512.1 uncharacterized protein LOC117933236 [Vitis riparia]6.0e-1845.1Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG   KRR+VK+ +RS  PD+V+IQE+K     R +V  VWS+R   W++L + G+SGGILV+W  K+++  +VV+GSF+VS+ F L+  +  W++AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  YA
        ++
Subjt:  YA

TrEMBL top hitse value%identityAlignment
A0A438BQB2 Transposon TX1 uncharacterized 149 kDa protein2.9e-1846.53Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SGGIL++W  K ++  +VV+GSF+VSV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

A0A438EGI8 Uncharacterized protein1.7e-1845.1Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        KGLG   KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W++L + G+SGGIL++W  K++   +VV+GSF+VS+ F L+  +  W++AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  YA
        Y+
Subjt:  YA

A0A438GS66 Uncharacterized protein2.9e-1839.84Show/hide
Query:  GLCIRPIPKKIEGGGEQRQ---KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVV
        G+   P+P+      E  Q   +GLG   KRR+VK+ + S  PD+V+IQE+K     R +V  VWS+R   W++L + G+SGGIL++W  K+++  +VV+
Subjt:  GLCIRPIPKKIEGGGEQRQ---KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVV

Query:  GSFTVSVLFQLENAKKCWITAVY
        GSF+VS+ F ++  +  W++AVY
Subjt:  GSFTVSVLFQLENAKKCWITAVY

A0A438J5R7 Beta-arabinofuranosyltransferase RAY11.3e-1845.54Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W +L + G+SGGIL++W  K ++  +VV+GSF++SV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

A5AJR1 Reverse transcriptase domain-containing protein2.9e-1846.53Show/hide
Query:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV
        +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SGGIL++W  K ++  +VV+GSF+VSV F L+     WI+AV
Subjt:  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAV

Query:  Y
        Y
Subjt:  Y

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGGAACGAAGAAGTCGAATGCCTAGGTCAAAACCGAAAAGATAAGATGGCCATAGTAGTTAGCGATTCTCAAGAACCTCTGATAGAAGCAAATCCGATTAATAC
TGAAGAGGATGATAGAAGGGAACCCTCGAGTCCTTGTGGATCTGGGCAGAAATCTGGTAGTGTAGAATCAGGGTCAAAGCTCGCAGTTCCGATATTAAGGGAAACGATAG
AAATCCTGTGGCAAAATGGGCTCTGTATTAGGCCAATTCCAAAGAAGATAGAAGGTGGGGGCGAGCAAAGGCAAAAGGGGTTGGGGGATGCAGATAAAAGAAGATTGGTT
AAGGAGTTAGTTAGGAGTAGCGGCCCAGATATTGTGCTTATTCAGGAGTCTAAATTGGGTTTTGTTCATAGGCACATTGTCAAGCAAGTGTGGAGCTCTCGTTTTATAGG
CTGGTCTTCCCTTAATTCTGAAGGGTCTTCAGGTGGGATTCTGGTGTTGTGGAAGGAGAAAGAGGTCAAGGCAATGGATGTGGTTGTGGGGAGTTTCACAGTGTCTGTCC
TGTTTCAGCTTGAGAACGCCAAGAAATGCTGGATTACCGCCGTGTATGCAGGGCTTGGTGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGGAACGAAGAAGTCGAATGCCTAGGTCAAAACCGAAAAGATAAGATGGCCATAGTAGTTAGCGATTCTCAAGAACCTCTGATAGAAGCAAATCCGATTAATAC
TGAAGAGGATGATAGAAGGGAACCCTCGAGTCCTTGTGGATCTGGGCAGAAATCTGGTAGTGTAGAATCAGGGTCAAAGCTCGCAGTTCCGATATTAAGGGAAACGATAG
AAATCCTGTGGCAAAATGGGCTCTGTATTAGGCCAATTCCAAAGAAGATAGAAGGTGGGGGCGAGCAAAGGCAAAAGGGGTTGGGGGATGCAGATAAAAGAAGATTGGTT
AAGGAGTTAGTTAGGAGTAGCGGCCCAGATATTGTGCTTATTCAGGAGTCTAAATTGGGTTTTGTTCATAGGCACATTGTCAAGCAAGTGTGGAGCTCTCGTTTTATAGG
CTGGTCTTCCCTTAATTCTGAAGGGTCTTCAGGTGGGATTCTGGTGTTGTGGAAGGAGAAAGAGGTCAAGGCAATGGATGTGGTTGTGGGGAGTTTCACAGTGTCTGTCC
TGTTTCAGCTTGAGAACGCCAAGAAATGCTGGATTACCGCCGTGTATGCAGGGCTTGGTGTCTAG
Protein sequenceShow/hide protein sequence
MFGNEEVECLGQNRKDKMAIVVSDSQEPLIEANPINTEEDDRREPSSPCGSGQKSGSVESGSKLAVPILRETIEILWQNGLCIRPIPKKIEGGGEQRQKGLGDADKRRLV
KELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVYAGLGV