; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001447 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001447
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr4:31399966..31400631
RNA-Seq ExpressionLag0001447
SyntenyLag0001447
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX95372.1 DNA primase small subunit-like protein, partial [Trifolium pratense]1.7e-1329.89Show/hide
Query:  IDHDVSQSISQPYVDGLYHNLSETHLSHG----LWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQI
        + H    S+S  + + +    S    S G     W+ P S  WK NVDA+   + +  G GW +R+S+GS + AG  K   R+     E++ ILE +R+ 
Subjt:  IDHDVSQSISQPYVDGLYHNLSETHLSHG----LWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQI

Query:  YSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFF
        +S+  ++       VV ESD++ +V  I+ +++ IS++S +I  I+ L       ++ F+ R +N+ AH+LAR     S   +F
Subjt:  YSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFF

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]8.8e-1534.62Show/hide
Query:  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAE
        H    + ++     PP S+  K+N D AWF  L  GGVGW+IR+S+G L+ AGG+   R     L+E LAI   +      + TH       V++ESD +
Subjt:  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAE

Query:  EIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
          + ++NG +   SD+ G++ +I++L    S V   F+P+S N +AH++A  V+K+
Subjt:  EIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.4e-1737.5Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        WKPP S  WK+N +AAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI EG+R I   R+ H     R + +ESD+ E + L++   +D
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
         ++I  L++EI ++   + IV +    R +N +AH LAR   +N
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.9e-1535.97Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        W+PP    W +N DA+W DS + GG+GWIIR+ +G ++ AG + +    +++LLE+ AILEG+R + +     P      + IE+D+ E+  L+N   ED
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR
        ++    +++EI  L     I+  A   R +N  AHSLA+
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.2e-1737.24Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSE
        WKPP S  WK+N DAAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI EG+R I  +  R   +   R + +ESD+ E + L++   +
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSE

Query:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
        D ++I  L++EI ++   + IV +    R +N +AH LAR   +N
Subjt:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

TrEMBL top hitse value%identityAlignment
A0A2Z6N4A7 RNase H domain-containing protein1.4e-1334.19Show/hide
Query:  LWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSE
        +W+ P     K NVDA++  +    G GW +RNSNG  + AG    + ++ I   E++AILE MR+  S+R  +       +V ESD++ +V  I+ + +
Subjt:  LWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSE

Query:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDP
         +S++S +I  IR L       +I F+ R +N+ AH+LARA    S   FF + P
Subjt:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDP

A0A6J1CP26 uncharacterized protein LOC1110134124.5e-1737.5Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        WKPP S  WK+N +AAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI EG+R I   R+ H     R + +ESD+ E + L++   +D
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
         ++I  L++EI ++   + IV +    R +N +AH LAR   +N
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

A0A6J1DNV9 uncharacterized protein LOC1110224031.9e-1535.97Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        W+PP    W +N DA+W DS + GG+GWIIR+ +G ++ AG + +    +++LLE+ AILEG+R + +     P      + IE+D+ E+  L+N   ED
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR
        ++    +++EI  L     I+  A   R +N  AHSLA+
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR

A0A6J1DSV1 uncharacterized protein LOC1110236081.6e-1737.24Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSE
        WKPP S  WK+N DAAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI EG+R I  +  R   +   R + +ESD+ E + L++   +
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSE

Query:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
        D ++I  L++EI ++   + IV +    R +N +AH LAR   +N
Subjt:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

A0A6P5S2T0 uncharacterized protein LOC1107519134.2e-1534.62Show/hide
Query:  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAE
        H    + ++     PP S+  K+N D AWF  L  GGVGW+IR+S+G L+ AGG+   R     L+E LAI   +      + TH       V++ESD +
Subjt:  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAE

Query:  EIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN
          + ++NG +   SD+ G++ +I++L    S V   F+P+S N +AH++A  V+K+
Subjt:  EIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein3.6e-0628.57Show/hide
Query:  SMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDIS
        S + K N DA+  +   V G+GW+IRNS G+++  G  K   RM     E  A+      I++ + T    +T+ V+ E D   + +LIN  S D   + 
Subjt:  SMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDIS

Query:  GLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNS
          +D I+      +  +  F+ R  N  A +L +   K+S
Subjt:  GLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNS

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-0829.05Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVG-WIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSE
        WK P     K N DA  F+  N+     WIIRN +G     G  ++         E+ A+L  ++Q + +           V++E D E +  L++G S 
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVG-WIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSE

Query:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDF
          + ++ L+D+IR  A K S V+ +F  R  N +AH LA+    ++ F
Subjt:  DISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDF

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-1030.13Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        WK P     K N DA W       G+GWI+RN +G ++  G + + R  ++  LE  A LE +R       T      + ++ ESDA+ +V L+N D + 
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDPSL
           +   +++I++L      VK  F+PR  N +A  +AR         F  +DP L
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDPSL

AT3G25270.1 Ribonuclease H-like superfamily protein2.0e-0425Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        W+ P S   K N D A+         GW++R+ NG  +G+G    S   D    E  A++  M+  +S+         R+V+ E D++++ +L+N +  +
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR-AVAKNSDFVFFPFDPS
            +  I E R    +       + PR++N  A  LA+  +  N  F F  + P+
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR-AVAKNSDFVFFPFDPS

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-0927.15Show/hide
Query:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED
        W PP   + K N DA+  +   V G+GWI+RNS G++I  G  K   RM     E   ++  ++  Y           ++V+ E D + I ++IN  S +
Subjt:  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSED

Query:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR-AVAKNSDFVFF
           +   +D I+        ++ +F  R  N  A  LA+ A+ +N+ +  F
Subjt:  ISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLAR-AVAKNSDFVFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCATAACTCGTGGATAGATCATGATGTTTCACAATCTATATCACAACCATACGTCGACGGGCTATATCACAATCTGTCGGAGACCCACTTGAGTCACGGGCTATG
GAAGCCGCCGGATAGCATGCAGTGGAAGATGAACGTCGACGCTGCGTGGTTCGATAGCTTGAACGTCGGAGGGGTGGGCTGGATTATCCGCAACTCAAATGGTTCTCTGA
TCGGAGCTGGAGGAAAAAAGATTTCCAGAAGAATGGATATCAGATTGCTAGAATCTTTAGCAATTTTAGAGGGGATGCGTCAAATTTATTCGAAGAGGCGTACTCACCCG
GAGCTTTTCACCCGCGAAGTGGTGATCGAGTCTGATGCTGAGGAGATTGTCAAGCTGATCAATGGCGATTCTGAAGATATTTCGGATATTTCGGGATTAATCGATGAAAT
TAGGGAGTTGGCGATGAAGATCAGCATTGTGAAGATCGCCTTCAGCCCGAGATCGTCGAACTTGTTGGCGCACTCTCTTGCGCGCGCTGTTGCTAAAAATAGTGATTTTG
TTTTTTTCCCTTTTGATCCTTCTCTGTGCTTGAGAATGGATGAGTCGTTGGTGGAGGCTCGTGATAGCCCCAGTTGGTTTTTCCCTTTTTTGGGAGGTTTGTTTGGTTGT
ATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCATAACTCGTGGATAGATCATGATGTTTCACAATCTATATCACAACCATACGTCGACGGGCTATATCACAATCTGTCGGAGACCCACTTGAGTCACGGGCTATG
GAAGCCGCCGGATAGCATGCAGTGGAAGATGAACGTCGACGCTGCGTGGTTCGATAGCTTGAACGTCGGAGGGGTGGGCTGGATTATCCGCAACTCAAATGGTTCTCTGA
TCGGAGCTGGAGGAAAAAAGATTTCCAGAAGAATGGATATCAGATTGCTAGAATCTTTAGCAATTTTAGAGGGGATGCGTCAAATTTATTCGAAGAGGCGTACTCACCCG
GAGCTTTTCACCCGCGAAGTGGTGATCGAGTCTGATGCTGAGGAGATTGTCAAGCTGATCAATGGCGATTCTGAAGATATTTCGGATATTTCGGGATTAATCGATGAAAT
TAGGGAGTTGGCGATGAAGATCAGCATTGTGAAGATCGCCTTCAGCCCGAGATCGTCGAACTTGTTGGCGCACTCTCTTGCGCGCGCTGTTGCTAAAAATAGTGATTTTG
TTTTTTTCCCTTTTGATCCTTCTCTGTGCTTGAGAATGGATGAGTCGTTGGTGGAGGCTCGTGATAGCCCCAGTTGGTTTTTCCCTTTTTTGGGAGGTTTGTTTGGTTGT
ATCTGA
Protein sequenceShow/hide protein sequence
MLHNSWIDHDVSQSISQPYVDGLYHNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHP
ELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDPSLCLRMDESLVEARDSPSWFFPFLGGLFGC
I