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Lag0001496 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001496
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr4:31991296..31998871
RNA-Seq ExpressionLag0001496
SyntenyLag0001496
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034955.1 gag/pol protein [Cucumis melo var. makuwa]2.9e-0575.68Show/hide
Query:  ESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
        ESGQ ADS    F DKTEWG GNII QDGIHSFP LG
Subjt:  ESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
KAA0043586.1 gag/pol protein [Cucumis melo var. makuwa]4.9e-0881.58Show/hide
Query:  GESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
        GESGQ ADS AYHFG+K EWG GNII QDGIHSFP LG
Subjt:  GESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
KAA0062047.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.0e-0568.29Show/hide
Query:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGKQ
        MGESGQ  DS    F DKTEWG GNII QD IHSFP +G+Q
Subjt:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGKQ
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.8e-0589.29Show/hide
Query:  AYHFGDKTEWGTGNIIVQDGIHSFPTLG
        AYHFGDKTEWG GNII QDGIHSFP LG
Subjt:  AYHFGDKTEWGTGNIIVQDGIHSFPTLG
TYK30754.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-0567.5Show/hide
Query:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGK
        +G+SGQ ADS    F DKT+WG GNII QDGIHSFP LG+
Subjt:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGK
TrEMBL top hitse value%identityAlignment
A0A5A7T0G5 Gag/pol protein1.4e-0575.68Show/hide
Query:  ESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
        ESGQ ADS    F DKTEWG GNII QDGIHSFP LG
Subjt:  ESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
A0A5A7TNG3 Gag/pol protein2.4e-0881.58Show/hide
Query:  GESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
        GESGQ ADS AYHFG+K EWG GNII QDGIHSFP LG
Subjt:  GESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLG
A0A5A7V524 Retrotransposable element Tf24.9e-0668.29Show/hide
Query:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGKQ
        MGESGQ  DS    F DKTEWG GNII QD IHSFP +G+Q
Subjt:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGKQ
A0A5A7VFG5 Ty1-copia retrotransposon protein1.9e-0589.29Show/hide
Query:  AYHFGDKTEWGTGNIIVQDGIHSFPTLG
        AYHFGDKTEWG GNII QDGIHSFP LG
Subjt:  AYHFGDKTEWGTGNIIVQDGIHSFPTLG
A0A5D3E4C4 Gag/pol protein1.1e-0567.5Show/hide
Query:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGK
        +G+SGQ ADS    F DKT+WG GNII QDGIHSFP LG+
Subjt:  MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAAAAGCCTACCACTTTGGGGACAAGACCGAATGGGGAACTGGGAACATAATCGTACAAGATGGAATTCACTCATTCCCGAC
TTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGACTAACTAGTCGATATTGGTCTAGATCCGTGGCACAGAAAATATTCTGCAGTGAGAAGAGTGCAACTAAGAAATTCC
AGCGATCAAGAAGCGAGGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTCCAATCGATGCGCTTCCGCTGCGTGGG
GACTTTTATTCCCTTCAGACACTTGGTCCAAAATCAAGAAAGGTGTCCGTTGAAGTATTCAGAGTTGTCAACAACGCAAGCACCACACCGGTGTGCATTTTTTTGTTGGT
TTTGCCGGTCACGTCTTCCCCAACTTCTACAAATTCATTGTTAGTGTCATGTGAAGGTCACATAGGATGTGAGCCTCAGAACATGGGGGAGAGAGAAAGATATAACTTTC
AAAGTTTTGCTGTAAATGGAGCCACCCCGAGAGGAGCGGAGCGGGGCGGGGCAGGGACGAGGACAATGTGCATCATTTGTACTGCAAATCAGCGAGGTGGTCGGAACGCC
CGATTGATTCAAGACATTAATCGGTTGATTACTCAAGGGGAGAATTTAATTATGGATGTTGATGCAGCATGTGACTTGGTGAATAAGAGAACTGCGTTTGGGGCAGTGCT
TCGTAACCAGAAGGGCCAGTTGCAGCTAGCAATGCATAAGGAATCTCCTATTTTCTCATCACCGTTGTGTGTTGATCAGGCAGTGGCGATACTTGAGGGACTTAAGCTAG
CGCTCAGAATGCTGTCAAAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAAAAGCCTACCACTTTGGGGACAAGACCGAATGGGGAACTGGGAACATAATCGTACAAGATGGAATTCACTCATTCCCGAC
TTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGACTAACTAGTCGATATTGGTCTAGATCCGTGGCACAGAAAATATTCTGCAGTGAGAAGAGTGCAACTAAGAAATTCC
AGCGATCAAGAAGCGAGGAGGCTGCTGCGTTTTCGTTCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGTCCAATCGATGCGCTTCCGCTGCGTGGG
GACTTTTATTCCCTTCAGACACTTGGTCCAAAATCAAGAAAGGTGTCCGTTGAAGTATTCAGAGTTGTCAACAACGCAAGCACCACACCGGTGTGCATTTTTTTGTTGGT
TTTGCCGGTCACGTCTTCCCCAACTTCTACAAATTCATTGTTAGTGTCATGTGAAGGTCACATAGGATGTGAGCCTCAGAACATGGGGGAGAGAGAAAGATATAACTTTC
AAAGTTTTGCTGTAAATGGAGCCACCCCGAGAGGAGCGGAGCGGGGCGGGGCAGGGACGAGGACAATGTGCATCATTTGTACTGCAAATCAGCGAGGTGGTCGGAACGCC
CGATTGATTCAAGACATTAATCGGTTGATTACTCAAGGGGAGAATTTAATTATGGATGTTGATGCAGCATGTGACTTGGTGAATAAGAGAACTGCGTTTGGGGCAGTGCT
TCGTAACCAGAAGGGCCAGTTGCAGCTAGCAATGCATAAGGAATCTCCTATTTTCTCATCACCGTTGTGTGTTGATCAGGCAGTGGCGATACTTGAGGGACTTAAGCTAG
CGCTCAGAATGCTGTCAAAAGCTTGA
Protein sequenceShow/hide protein sequence
MGESGQYADSKAYHFGDKTEWGTGNIIVQDGIHSFPTLGKQMSVPLSGLTSRYWSRSVAQKIFCSEKSATKKFQRSRSEEAAAFSFVGASLAKNGQVYNEGPIDALPLRG
DFYSLQTLGPKSRKVSVEVFRVVNNASTTPVCIFLLVLPVTSSPTSTNSLLVSCEGHIGCEPQNMGERERYNFQSFAVNGATPRGAERGGAGTRTMCIICTANQRGGRNA
RLIQDINRLITQGENLIMDVDAACDLVNKRTAFGAVLRNQKGQLQLAMHKESPIFSSPLCVDQAVAILEGLKLALRMLSKA