; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001556 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001556
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptioncoiled-coil domain-containing protein 12-like
Genome locationchr4:32803883..32807587
RNA-Seq ExpressionLag0001556
SyntenyLag0001556
Gene Ontology termsGO:0005684 - U2-type spliceosomal complex (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domainsIPR013169 - mRNA splicing factor Cwf18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]6.9e-7095.45Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA ADT EEINL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]6.9e-7095.45Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA ADT EEINL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]3.4e-6994.16Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG  ADT EE NL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]9.1e-7095.45Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGEDKENGA ADT EE NL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]1.1e-6793.51Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAARKERLRALRAAQELLNA DEK SGGEDKENGATAD  EE NL+MKFRNYVPHDKELQEGKLAPPVLPKF+DPV TEP QLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNG E
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

TrEMBL top hitse value%identityAlignment
A0A1S3ATB1 coiled-coil domain-containing protein 123.8e-6690.91Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDS EQVAAARKERL+ALRAAQELLNA DEK S GEDKENGATADT +E NL+MKFRNYVPHDKELQEGKLAPPVLPKF+DPV TEPPQ KEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQ+AEGDDDQNG E
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X12.0e-6792.21Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAARKERLRALRAAQELLN PDEKTSGGEDK+NG   DT EE NLSMKFRNYVPHDKELQEGKLAPPVLPKF+DPVA EPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM+EQEKQK+SAEGDD QNGTE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A6J1E719 coiled-coil domain-containing protein 12-like2.7e-6792.31Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTE--EEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDP
        MATE+DSVEQVAAARKERLRALRAAQELLNA DEK SGGEDKENGAT D E  EE NLSMKFRNYVPHDKELQEGKL PP LPKF+DPVATEPPQLKEDP
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTE--EEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A6J1GST8 coiled-coil domain-containing protein 12-like3.4e-7095.45Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA ADT EEINL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X11.7e-6994.16Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV
        MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG  ADT EE NL MKFRNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFV
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
        NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE

SwissProt top hitse value%identityAlignment
Q8R344 Coiled-coil domain-containing protein 126.9e-1238Show/hide
Query:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTE-----EEI--NLSMKFRNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQL
        +E+ A  RKERL+ALR          EKT G +D+E+G     +     EE+  +  ++ RNYVP D++L+  ++  A PV      K     A   P +
Subjt:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTE-----EEI--NLSMKFRNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA
        +E    N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSA

Q8WUD4 Coiled-coil domain-containing protein 122.6e-1136.65Show/hide
Query:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENG-------ATADTEEEINLSMKFRNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQL
        +E+ A  RKERL+ALR          EKT G +DKE+G          + E E +  ++ RNYVP D++L++ ++  A PV      K     A   P +
Subjt:  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENG-------ATADTEEEINLSMKFRNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEE
        +E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +        TE+
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEE

Q9UU80 Pre-mRNA-splicing factor cwf186.9e-0427.01Show/hide
Query:  SVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQ-------------
        S+++VA +RK+RL  LR  ++L N                T D++E     ++ RNY P  +  + G + PP + +  + ++ E  +             
Subjt:  SVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQ-------------

Query:  LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL
        ++E   V + PKKP WDL RD+++++  LE + Q A+
Subjt:  LKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL

Arabidopsis top hitse value%identityAlignment
AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).3.5e-4366.44Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPP--QLKEDP
        MA+E++S+EQ AAARKE L+ALRAAQEL           E KE+G     EE+   +MKFRNYVP  KELQ+GKLAPP LPKF+DP+   PP  + KEDP
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPP--QLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLMEEQEK+++ AE D
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATAACTCTGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCAGCTCAGGAATTGTTAAATGC
TCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAACGGTGCTACTGCAGATACTGAAGAAGAAATTAATCTTAGTATGAAATTTCGGAACTATGTTCCACATGACA
AGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTCGACGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTAAATATTGCTCCT
AAGAAACCAAACTGGGACCTAAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAA
GCAGTCAGCTGAAGGAGACGATGATCAAAATGGTACAGAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTATAACTCTGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCAGCTCAGGAATTGTTAAATGC
TCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAACGGTGCTACTGCAGATACTGAAGAAGAAATTAATCTTAGTATGAAATTTCGGAACTATGTTCCACATGACA
AGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTCGACGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTAAATATTGCTCCT
AAGAAACCAAACTGGGACCTAAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAA
GCAGTCAGCTGAAGGAGACGATGATCAAAATGGTACAGAGGAATAG
Protein sequenceShow/hide protein sequence
MPITLAMATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAP
KKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEE