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Lag0001559 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001559
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein L27-like
Genome locationchr4:32829678..32830367
RNA-Seq ExpressionLag0001559
SyntenyLag0001559
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001684 - Ribosomal protein L27
IPR018261 - Ribosomal protein L27, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583414.1 hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia]5.1e-7593.92Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYA+T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT

XP_016901663.1 PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]1.1e-7493.84Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

XP_022964702.1 uncharacterized protein LOC111464705 [Cucurbita moschata]1.8e-7594.59Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT

XP_022970580.1 uncharacterized protein LOC111469515 [Cucurbita maxima]7.9e-7695.89Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

XP_038877023.1 50S ribosomal protein L27-like [Benincasa hispida]1.3e-7593.24Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+T VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT
        FALKEGCV FEKHKLSGRKWVH++PKEGHVLHP+YATTSTSPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT

TrEMBL top hitse value%identityAlignment
A0A1S4E0A6 50S ribosomal protein L27-like5.5e-7593.84Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

A0A5A7TXR2 50S ribosomal protein L27-like5.5e-7593.84Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEG VKFEKHKLSGRKWVH++PK+GHVLHPVYATTSTSP+LKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

A0A6J1DS22 uncharacterized protein LOC1110238674.0e-7393.15Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIAT FCKRLNVKDL+TNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEGC+KFEKHKLSGRKWVH++PKEGHVLHPVYA  ST+ ELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

A0A6J1HP14 uncharacterized protein LOC1114647058.5e-7694.59Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMT

A0A6J1I390 uncharacterized protein LOC1114695153.8e-7695.89Show/hide
Query:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATTFCKRLNVKDL+TNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVHI+PKEGHVLHPVYATT  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKT

SwissProt top hitse value%identityAlignment
A9IM57 50S ribosomal protein L271.7e-2568.67Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL EG V F++ K   R +V ++P
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP

B4RZH4 50S ribosomal protein L276.6e-2569.51Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV
        A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFALK+G V+F+      RK+V IV
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV

Q48NL3 50S ribosomal protein L273.3e-2464.29Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPK
        A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VG+GKDHTLFA  EG +KF+     GR++V IVPK
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPK

Q6G0T7 50S ribosomal protein L271.9e-2467.07Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFAL  G V F++ K + R +V +V
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIV

Q6G507 50S ribosomal protein L272.3e-2567.47Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL +G V F++ K + R +V ++P
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVP

Arabidopsis top hitse value%identityAlignment
AT2G16930.1 Ribosomal protein L27 family protein1.9e-5668.21Show/hide
Query:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT

AT2G16930.2 Ribosomal protein L27 family protein1.9e-5668.21Show/hide
Query:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT

AT2G16930.3 Ribosomal protein L27 family protein1.9e-5668.21Show/hide
Query:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y   + +   K  T +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT

AT5G15220.1 Ribosomal protein L27 family protein4.6e-5871.81Show/hide
Query:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVY--ATTSTSPELKT
        LFALKEG V+FEK K++GRKW+H+ P  GHVLHP+Y  A  + S +LKT
Subjt:  LFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVY--ATTSTSPELKT

AT5G40950.1 ribosomal protein large subunit 271.0e-2060Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKE
        A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+L +G VKFEK     RK + + P+E
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATTGCCACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGATTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGCTGGGCTACTAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGTAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAAT
GACAACGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATTGCCACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGATTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGCTGGGCTACTAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGTAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGTGGACGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAAT
GACAACGACATGA
Protein sequenceShow/hide protein sequence
MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKF
EKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTMTTT