CuGenDBv2

Gene ID	Lag0001571
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr4:32985653..32988340
RNA-Seq Expression	Lag0001571
Synteny	Lag0001571
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8686265.1 hypothetical protein F3Y22_tig00111070pilonHSYRG00067 [Hibiscus syriacus]

1.2e-28

48.12

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M NEDW  LN +A+  IR+ LS  VA  + NE T  +LM AL++ YEKPSA+NK++L ++ FN++M+E  SV  ++NE+ T+  QL SV IEF +EV  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNA---ASVHIASDG
         LL+SLPDSW    T+VS+S+RNN LKF  V DL + EEIR      A   +++H+ S G
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNA---ASVHIASDG

TKR86343.1 hypothetical protein D5086_0000239010 [Populus alba]

1.2e-28

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

TKR90717.1 hypothetical protein D5086_0000230290 [Populus alba]

9.3e-29

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

TKS02399.1 hypothetical protein D5086_0000163470 [Populus alba]

1.2e-28

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

TKS13843.1 hypothetical protein D5086_0000049350 [Populus alba]

1.2e-28

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

TrEMBL top hits

e value

%identity

Alignment

A0A4U5NTA0 CCHC-type domain-containing protein

5.9e-29

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

A0A4U5P397 CCHC-type domain-containing protein

4.5e-29

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

A0A4U5PY83 CCHC-type domain-containing protein

5.9e-29

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

A0A4U5QGR0 Uncharacterized protein

5.9e-29

46.15

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  E+W+ L+ + +  IR+ LS  VA  VT E +  KLMEAL+  YEKPSANNKV+L KK FN++M EN SV  ++N   T+ NQL SV IEF DE+  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR
         LL SLP SWE M+T+VSNS   + LK+  + DL + EE+RR  +D+  S   +S GS   +   G         GR SK+R
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTR

A0A6A2Z5A8 Uncharacterized protein

5.9e-29

48.12

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M NEDW  LN +A+  IR+ LS  VA  + NE T  +LM AL++ YEKPSA+NK++L ++ FN++M+E  SV  ++NE+ T+  QL SV IEF +EV  +
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNA---ASVHIASDG
         LL+SLPDSW    T+VS+S+RNN LKF  V DL + EEIR      A   +++H+ S G
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNA---ASVHIASDG

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.0e-09

29.93

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Query:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI
        M  EDW  L+E A + IR+ LS  V + + +E T   +   L + Y   +  NK+YL K+ + + MSE  +  S++N    LI QL ++ ++  +E   I
Subjt:  MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVI

Query:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDN
         LL SLP S++ + T++ +     T++   V    ++ E  R   +N
Subjt:  QLLTSLPDSWETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGAACGAAGATTGGGAGGCTTTGAATGAAGAGGCAGTTGCAAACATAAGGGTGTGTTTGTCAATGGTCGTGGCAAGTCTAGTGACCAATGAGACAACTGTAGTTAA
ATTGATGGAAGCGCTAACAAACAGGTATGAAAAACCCTCTGCTAATAATAAGGTCTACCTAGGTAAGAAGTTTTTCAACATGCAAATGTCTGAGAATGTTTCTGTGAATT
CCTATATTAATGAGGTTACCACTTTGATTAATCAGTTAAAATCTGTTAATATAGAGTTTACTGATGAAGTGAATGTTATTCAGTTGCTAACATCTTTACCTGATAGTTGG
GAAACGATGAAGACATCAGTGTCTAATTCAACTAGAAATAATACTTTAAAATTTTCAAAAGTTTGTGATTTAGCTATAGTTGAGGAAATTCGTAGAGTGACACAAGACAA
TGCAGCTTCTGTACACATAGCTTCAGATGGGAGTTTGTTCACATTATTCATAGGTGGGCATCATGACCTAGTGAGGATGGGGAATGGTAGAACTTCCAAGACTAGAGTGA
TTGGAGATTGGATGTCGATTAAAGCTGCAGATGGTAGTTGTAGAGGTATAGTTGAGTCAGCAGTAATGATAGCCAATTTCAATCAGTCCAATCAAGATCCTTCAGTTCAT
AAACAATTAGGAAGTCCAAAAGAGAAAGTCGATGGCTATCGTGAATCCCCAATTGTCAGATGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAATTG
GAAGGCCAAAGCAGTTGCTATGGTCAAAGGTCAGGTCTTTAGCTTGGTAATAGGTTCGAATAGAGGATTCAAGCCATTCTCAAAGTGTATCTTCTTCAGGAACAGTTGTT
CGGATAGGAAGAAGATGAAGGTGTCACCACTTAGGTATTTTGAGCCTTGGAGTTTACCAAGAAGATCAGAGATAACAGTTGTAGTGGGAGTAGATTCTTGGAATTTGCCA
TGA

mRNA sequence

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Protein sequence

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MMNEDWEALNEEAVANIRVCLSMVVASLVTNETTVVKLMEALTNRYEKPSANNKVYLGKKFFNMQMSENVSVNSYINEVTTLINQLKSVNIEFTDEVNVIQLLTSLPDSW
ETMKTSVSNSTRNNTLKFSKVCDLAIVEEIRRVTQDNAASVHIASDGSLFTLFIGGHHDLVRMGNGRTSKTRVIGDWMSIKAADGSCRGIVESAVMIANFNQSNQDPSVH
KQLGSPKEKVDGYRESPIVRCSNELKKSLRRVEASNWKAKAVAMVKGQVFSLVIGSNRGFKPFSKCIFFRNSCSDRKKMKVSPLRYFEPWSLPRRSEITVVVGVDSWNLP

Lag0001571 (gene) of Sponge gourd (AG-4) v1 genome