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Lag0001580 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001580
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr4:33103611..33108834
RNA-Seq ExpressionLag0001580
SyntenyLag0001580
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]2.8e-0862.26Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LP  ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

KAA0059158.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa]5.7e-0964.15Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LPA ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

TXG48538.1 hypothetical protein EZV62_024413 [Acer yangbiense]4.9e-0857.69Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE
        F++ +F+GKGDFG+WRKK+KA+LVQQK  K L +EKDLP +LS ++K+++ E
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE

TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.9e-0862.26Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LP  ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]4.9e-0862.26Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LP  ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

TrEMBL top hitse value%identityAlignment
A0A5A7U459 Putative polyprotein1.4e-0862.26Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LP  ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

A0A5A7UVB6 Transducin/WD40 repeat-like superfamily protein2.8e-0964.15Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LPA ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

A0A5C7GV29 Uncharacterized protein2.4e-0857.69Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE
        F++ +F+GKGDFG+WRKK+KA+LVQQK  K L +EKDLP +LS ++K+++ E
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE

A0A5C7IML8 gag_pre-integrs domain-containing protein2.4e-0859.62Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE
        FE+ +F+GKGDF +WRKK+KA+LVQQK AK L +EKDLP +LS ++K+++ E
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDE

A0A5D3CQJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-942.4e-0862.26Show/hide
Query:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI
        FEV++F+G GDF LWRKKI+A+LVQ KVAKIL DE+ LP  ++E +K++MDE+
Subjt:  FEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGGAACTGACGAGGACAATCGAAAAGAAATCAGGCTGGGAGATGGACCAGGGCGGGGAAACGGGCCAGTGGACCAGGCCAAGACCGAAGGGGTCGGAATTTTG
GCCAGACCCCATGCTCGGCCCGCTTGTGCGGGCCGAGTCCCACCGACTCTGTTCGGTCCATACCGTCTCTGGCCGCCTCGGTTTCGCCTGGTTCGTCCCAAAACGCCTCC
GAATTCCTAGAAACCTTAGGAGGATGAGCAGGTATTTATACCCCTCTTCGCCACTGAAGAAAGGGACTCGAACTCTCTACTCTCTAGCCCTCCTACTTCCGTTTTCTGAC
TTAAGCATCGGAGTCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCCGTCTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCGCATGAAGG
TCAGGGACTGCCGTCGATCTCCTTTGATGCGTTCAATCAGCGTGGGTCTCGAGTTATCGGCGTGGGTCTGTTTGGCGTCGGTTTGGGTCTCTTCTTCGAGGTAGAGACTT
CAGTTTACTGCTGCAGTCGTTTTCGGAGCAGGCATGAGTCTCGATCGTTGTGGCTGTTTCGGCGTGGTAATCTCTCCGTGGGTATTTCTCTTGTGAGCTCAAATCCATTG
AGTTATATATTGATTAATGTCTTCAATGTCGACTCGTTTGAGGTTGCTCGATTTGATGGGAAGGGTGATTTCGGTCTATGGAGAAAGAAGATTAAAGCTCTTTTGGTGCA
ACAAAAAGTAGCTAAAATCTTGGGTGACGAAAAGGACCTTCCGGCGACACTCTCAGAAGATGATAAGAAGGAAATGGATGAGATTCCTATTCGACCATCATACTCTATCT
CTCAGATGGAGTGCTTAGGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGGAACTGACGAGGACAATCGAAAAGAAATCAGGCTGGGAGATGGACCAGGGCGGGGAAACGGGCCAGTGGACCAGGCCAAGACCGAAGGGGTCGGAATTTTG
GCCAGACCCCATGCTCGGCCCGCTTGTGCGGGCCGAGTCCCACCGACTCTGTTCGGTCCATACCGTCTCTGGCCGCCTCGGTTTCGCCTGGTTCGTCCCAAAACGCCTCC
GAATTCCTAGAAACCTTAGGAGGATGAGCAGGTATTTATACCCCTCTTCGCCACTGAAGAAAGGGACTCGAACTCTCTACTCTCTAGCCCTCCTACTTCCGTTTTCTGAC
TTAAGCATCGGAGTCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCCGTCTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCGCATGAAGG
TCAGGGACTGCCGTCGATCTCCTTTGATGCGTTCAATCAGCGTGGGTCTCGAGTTATCGGCGTGGGTCTGTTTGGCGTCGGTTTGGGTCTCTTCTTCGAGGTAGAGACTT
CAGTTTACTGCTGCAGTCGTTTTCGGAGCAGGCATGAGTCTCGATCGTTGTGGCTGTTTCGGCGTGGTAATCTCTCCGTGGGTATTTCTCTTGTGAGCTCAAATCCATTG
AGTTATATATTGATTAATGTCTTCAATGTCGACTCGTTTGAGGTTGCTCGATTTGATGGGAAGGGTGATTTCGGTCTATGGAGAAAGAAGATTAAAGCTCTTTTGGTGCA
ACAAAAAGTAGCTAAAATCTTGGGTGACGAAAAGGACCTTCCGGCGACACTCTCAGAAGATGATAAGAAGGAAATGGATGAGATTCCTATTCGACCATCATACTCTATCT
CTCAGATGGAGTGCTTAGGCAAGTGA
Protein sequenceShow/hide protein sequence
MYKELTRTIEKKSGWEMDQGGETGQWTRPRPKGSEFWPDPMLGPLVRAESHRLCSVHTVSGRLGFAWFVPKRLRIPRNLRRMSRYLYPSSPLKKGTRTLYSLALLLPFSD
LSIGVGVASTTPVCRFSVLQATSSPSSTNLPLVAHEGQGLPSISFDAFNQRGSRVIGVGLFGVGLGLFFEVETSVYCCSRFRSRHESRSLWLFRRGNLSVGISLVSSNPL
SYILINVFNVDSFEVARFDGKGDFGLWRKKIKALLVQQKVAKILGDEKDLPATLSEDDKKEMDEIPIRPSYSISQMECLGK