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Lag0001582 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001582
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein RADIALIS-like 3
Genome locationchr4:33121451..33121837
RNA-Seq ExpressionLag0001582
SyntenyLag0001582
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4091.49Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIAMAVGGKSADEVKRHYEILLEDLRRIESG VPIPNYRG  NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]1.2e-4092.55Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIAMAVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]9.2e-4192.55Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIAMAVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]6.4e-4294.68Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGA NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

XP_038888995.1 protein RADIALIS-like 3 isoform X1 [Benincasa hispida]2.0e-4090.43Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIAMAVGGKS DEVKRHYE+LLEDLRRIESGRVPIPNYRG GN DEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

TrEMBL top hitse value%identityAlignment
A0A1S3BHB0 protein RADIALIS-like 31.2e-3887.23Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLR+IESGRVPIPNYRG  N DEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

A0A5D3DF44 Protein RADIALIS-like 38.4e-4084.69Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIKDRNH
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSA+EV+RHYEILLEDLR+IESGRVPIPNYRG  N DEELRLVKM+ ++ H
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIKDRNH

A0A6J1C2H2 protein RADIALIS-like 31.4e-3988Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLVKMIKDR
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIA AVGGKSADEVKRHY+ILLEDLRRIESGRVPIPNYR     AGN DEELRL+K +K R
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEELRLVKMIKDR

A0A6J1GKW1 protein RADIALIS-like 35.8e-4192.55Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIAMAVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

A0A6J1ICR6 protein RADIALIS-like 34.4e-4192.55Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIAMAVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEELRL+K +K
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIK

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.1e-2457.14Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG---DEELRLVKM
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG    EE R+  M
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG---DEELRLVKM

Q1A173 Protein RADIALIS-like 62.0e-2262.82Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

Q58FS3 Transcription factor RADIALIS1.7e-2164.18Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        W+AK+NK FE+ALA+YDK+TP+RW N+A AV G++ +EVK+HYEIL+ED++ IESG+VP PNYR  G
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG

Q6NNN0 Protein RADIALIS-like 31.1e-2362.2Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN
        MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN

Q8GW75 Protein RADIALIS-like 51.4e-2354.46Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLVKMI
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLVKMI

Query:  K
        +
Subjt:  K

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 59.8e-2554.46Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLVKMI
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+A AVG KSA+EVKRHY+IL+EDL  IE   VP+P Y       +  G  D +LRL+K +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNY-------RGAGNGDEELRLVKMI

Query:  K
        +
Subjt:  K

AT1G75250.1 RAD-like 61.1e-2347.46Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIKDRNHFE
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+   +        + I D +   
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIKDRNHFE

Query:  LKSSLFLFSIFYHLNHAS
        +   L++    Y  NH+S
Subjt:  LKSSLFLFSIFYHLNHAS

AT1G75250.2 RAD-like 61.4e-2362.82Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+A AVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT2G18328.1 RAD-like 42.3e-2161.54Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA AVGGKS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 15.8e-2557.14Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG---DEELRLVKM
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+A  VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G   NG    EE R+  M
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG---NG---DEELRLVKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCAGCGGCCGGAGGCGACATGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCG
ATGGCAGAATATCGCCATGGCCGTCGGCGGGAAGTCGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGTTAGTGAAGATGATCAAGGATAGGAACCATTTTGAACTCAAAAGCTCATTGTTTTTATTTTCTATT
TTTTACCATTTAAACCATGCATCTGTTGGTCATTGTTACAAGTATCATGTCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGAGCTCTTTGAAGCAGCAGCGGCCGGAGGCGACATGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCG
ATGGCAGAATATCGCCATGGCCGTCGGCGGGAAGTCGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGTTAGTGAAGATGATCAAGGATAGGAACCATTTTGAACTCAAAAGCTCATTGTTTTTATTTTCTATT
TTTTACCATTTAAACCATGCATCTGTTGGTCATTGTTACAAGTATCATGTCAGTTAG
Protein sequenceShow/hide protein sequence
MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAMAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELRLVKMIKDRNHFELKSSLFLFSI
FYHLNHASVGHCYKYHVS