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Lag0001595 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001595
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr4:33296618..33297118
RNA-Seq ExpressionLag0001595
SyntenyLag0001595
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-2944.83Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+    NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W+ L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
          K KL  +KKGS+ L+EYF K+   VDAL +  KP+S+ DHIL+
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]3.6e-2941.32Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+ +  NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W  L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIGN-----VKEIFIRSTS
          K KL  +KK S+ L+EYF K+++ VDAL +  KP+S+ DHIL+    +G+     +  IF R+ S
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIGN-----VKEIFIRSTS

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.8e-2944.83Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+    NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W+ L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
          K KL  +KKGS+ L+EYF K+   VDAL +  KP+S+ DHIL+
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]4.5e-3246.21Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKI--SNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+   L+G+ L+ +ID + + P +F+ TT + SS+     NP Y  WI+QD LI+ W LGSM+  I++++LDCK++RE+W  L   F+S+ +AR++
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKI--SNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
         LK KL   KKG+L L++YF K+KNLVD+L  A K +S  DHI+H
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]2.0e-3246.31Show/hide
Query:  KFQVLITLKGHRLQKFIDVDYEVPPKFLPTTS--EASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL
        KFQVL  ++GH L+++ID D E P +F+       +S+ +  NP+Y +WI+QD LI+ W LGSMS  I++++LDC+  +E+W  L   F+S+ +AR++ L
Subjt:  KFQVLITLKGHRLQKFIDVDYEVPPKFLPTTS--EASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL

Query:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIG
        K+KL  MKKGS+ L+ YF K+KNLVD+L TA K +   DHI+H   R+G
Subjt:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIG

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2944.83Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+    NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W+ L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
          K KL  +KKGS+ L+EYF K+   VDAL +  KP+S+ DHIL+
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like1.7e-2941.32Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+ +  NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W  L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIGN-----VKEIFIRSTS
          K KL  +KK S+ L+EYF K+++ VDAL +  KP+S+ DHIL+    +G+     +  IF R+ S
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIGN-----VKEIFIRSTS

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2944.83Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+L  L+ + L+ F++ + E P K+L +T  S AS+    NP Y+ W RQD LI++W LGSMS  I+ ++L CK+++E+W+ L   FSS+ +A+ +
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTT--SEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
          K KL  +KKGS+ L+EYF K+   VDAL +  KP+S+ DHIL+
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

A0A6J1DLT9 uncharacterized protein LOC1110217572.2e-3246.21Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKI--SNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL
        +WKFQ+   L+G+ L+ +ID + + P +F+ TT + SS+     NP Y  WI+QD LI+ W LGSM+  I++++LDCK++RE+W  L   F+S+ +AR++
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKI--SNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARIL

Query:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH
         LK KL   KKG+L L++YF K+KNLVD+L  A K +S  DHI+H
Subjt:  DLKTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILH

A0A6J1DSS1 uncharacterized protein LOC1110235869.9e-3346.31Show/hide
Query:  KFQVLITLKGHRLQKFIDVDYEVPPKFLPTTS--EASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL
        KFQVL  ++GH L+++ID D E P +F+       +S+ +  NP+Y +WI+QD LI+ W LGSMS  I++++LDC+  +E+W  L   F+S+ +AR++ L
Subjt:  KFQVLITLKGHRLQKFIDVDYEVPPKFLPTTS--EASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL

Query:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIG
        K+KL  MKKGS+ L+ YF K+KNLVD+L TA K +   DHI+H   R+G
Subjt:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIG

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.7e-1126.95Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL
        MW  QV     G+ L  F+D    +PP  + T     +A   NPDY  W RQD LI +  LG++S  +   +    T+ ++W+ L   +++     +  L
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL

Query:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHI
        +T+L    KG+  + +Y   +    D L    KP+ + + +
Subjt:  KTKLGLMKKGSLGLQEYFTKVKNLVDALTTARKPISNYDHI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.2e-0725Show/hide
Query:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL
        MW  QV     G+ L  F+D    +PP  + T     +    NPDY  W RQD LI +  LG++S  +   +    T+ ++W+ L   +++     +  L
Subjt:  MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDL

Query:  KTKLGLMKKGSLGL-QEYFTKVKNLVDALTTARKPI
        +      +   LG   ++  +V+ +++ L    KP+
Subjt:  KTKLGLMKKGSLGL-QEYFTKVKNLVDALTTARKPI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGTTTCAGGTATTAATTACTCTGAAAGGTCATAGATTACAGAAGTTTATCGATGTTGATTATGAAGTCCCACCAAAATTTCTTCCCACGACCAGTGAAGCATC
CTCTGCAAAAATCTCCAACCCAGACTATGAATACTGGATTCGGCAAGATAATCTAATAACAACTTGGTTTCTTGGATCAATGTCGACTCCAATTGTTGCAGAATTGCTCG
ATTGCAAAACTTCGCGAGAGGTATGGGATTATCTTGCTACTTGTTTTTCTTCCAAACAAGTTGCTAGAATTCTTGACCTAAAGACTAAGCTCGGTCTTATGAAGAAAGGA
AGTCTTGGTCTCCAAGAATACTTCACTAAGGTGAAGAATTTGGTTGATGCCCTAACCACTGCTAGAAAACCAATCTCGAACTATGATCACATTCTTCATAATTCTTTTCG
GATTGGGAATGTTAAAGAAATATTTATTCGTTCCACTTCCTATTTATTAGGAAGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGTTTCAGGTATTAATTACTCTGAAAGGTCATAGATTACAGAAGTTTATCGATGTTGATTATGAAGTCCCACCAAAATTTCTTCCCACGACCAGTGAAGCATC
CTCTGCAAAAATCTCCAACCCAGACTATGAATACTGGATTCGGCAAGATAATCTAATAACAACTTGGTTTCTTGGATCAATGTCGACTCCAATTGTTGCAGAATTGCTCG
ATTGCAAAACTTCGCGAGAGGTATGGGATTATCTTGCTACTTGTTTTTCTTCCAAACAAGTTGCTAGAATTCTTGACCTAAAGACTAAGCTCGGTCTTATGAAGAAAGGA
AGTCTTGGTCTCCAAGAATACTTCACTAAGGTGAAGAATTTGGTTGATGCCCTAACCACTGCTAGAAAACCAATCTCGAACTATGATCACATTCTTCATAATTCTTTTCG
GATTGGGAATGTTAAAGAAATATTTATTCGTTCCACTTCCTATTTATTAGGAAGAGAATGA
Protein sequenceShow/hide protein sequence
MWKFQVLITLKGHRLQKFIDVDYEVPPKFLPTTSEASSAKISNPDYEYWIRQDNLITTWFLGSMSTPIVAELLDCKTSREVWDYLATCFSSKQVARILDLKTKLGLMKKG
SLGLQEYFTKVKNLVDALTTARKPISNYDHILHNSFRIGNVKEIFIRSTSYLLGRE