; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001628 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001628
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:33787327..33793012
RNA-Seq ExpressionLag0001628
SyntenyLag0001628
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1152.81Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]1.3e-1050.56Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM K   P+        S    K F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI

KAA0054202.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-1049.45Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS---GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P+       W  S    K F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS---GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.2e-1152.81Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI

TYK18885.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.6e-1152.94Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSN
        +KK+ PFPD D+ DMLEQL+E QLI+LPKCKRPE+  K   P+        S S  K F  K L  K ++  KIELD+DEVAQ+N
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSN

TrEMBL top hitse value%identityAlignment
A0A5A7TH26 Ty3-gypsy retrotransposon protein5.7e-1252.81Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI

A0A5A7TVR2 Ty3-gypsy retrotransposon protein1.1e-1048.31Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWS-SSGKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++K+ PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P+        S  + K F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWS-SSGKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI

A0A5A7UJR2 Reverse transcriptase6.3e-1150.56Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM K   P+        S    K F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSNLATI

A0A5D3D1E5 Ribonuclease H5.7e-1252.81Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI
        ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F  K L  K +  +KIEL+LD+VAQ+N A +
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFRPKGLNSKASYGRKIELDLDEVAQSNLATI

A0A5D3D5T0 Ty3-gypsy retrotransposon protein3.7e-1152.94Show/hide
Query:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSN
        +KK+ PFPD D+ DMLEQL+E QLI+LPKCKRPE+  K   P+        S S  K F  K L  K ++  KIELD+DEVAQ+N
Subjt:  KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFRPKGLNSKASYGRKIELDLDEVAQSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCATACCTTCTCGAGCTCCCTCACGTTTTGGCTTCGCTCTCGAGCTTGTTTACACGCCGGCATTTGTCTTCCTTCAGAGATGGTTTCACATTGAGGCCGATCCA
AGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAG
GCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAAC
AAGTCAGCAGGCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATC
CAGAGATCATCACGCCAACAGGCCGATCATCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGT
CCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGA
GATCATCAACCTAGCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTTAAA
GCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAATTGAGAACGCCAATCGGGTATCAGCCACCAAATTTCAACATT
TGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTC
AAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGAAGAAAATCTGTCCTTTCCCTGACGACGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGA
GCTTCCTAAGTGTAAACGACCAGAAGAGATGGAAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGAC
TTAATTCTAAAGCTAGCTATGGAAGGAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAATAAAGAAGAAT
CCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAGAG
AACCTTGCGACTTCCTACTGCATCGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCATACCTTCTCGAGCTCCCTCACGTTTTGGCTTCGCTCTCGAGCTTGTTTACACGCCGGCATTTGTCTTCCTTCAGAGATGGTTTCACATTGAGGCCGATCCA
AGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAG
GCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAAC
AAGTCAGCAGGCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATC
CAGAGATCATCACGCCAACAGGCCGATCATCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGT
CCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGA
GATCATCAACCTAGCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTTAAA
GCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAATTGAGAACGCCAATCGGGTATCAGCCACCAAATTTCAACATT
TGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTC
AAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGAAGAAAATCTGTCCTTTCCCTGACGACGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGA
GCTTCCTAAGTGTAAACGACCAGAAGAGATGGAAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGAC
TTAATTCTAAAGCTAGCTATGGAAGGAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAATAAAGAAGAAT
CCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAGAG
AACCTTGCGACTTCCTACTGCATCGACGTAG
Protein sequenceShow/hide protein sequence
MEAYLLELPHVLASLSSLFTRRHLSSFRDGFTLRPIQEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKIN
KSAGDHPRDQQANRPIKKINKSAGRSSRKINKPTSRSRDHHANRPIIKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTDRSSKKINKPISRSKRSSSQQADPR
DHQPSNELTLQEDKASIAGGQETTLQGAYTNDKFLLKLSTVDLLKIPSCIPNLILRGLIIENANRVSATKFQHLMERAILNNILPTSLRHARTLIAKIASLNSLPLRCAF
KACTGNSSTSLKKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGKMFRPKGLNSKASYGRKIELDLDEVAQSNLATIKGKSKHQIKKN
PKKLQPKRKRSKKFSQPQQLVMLNKSFSKTFHKKKKRTLRLPTAST