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Lag0001652 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001652
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:34025185..34025577
RNA-Seq ExpressionLag0001652
SyntenyLag0001652
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1252.38Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND  QD R++ +SSSGG++  R SSPK+ GGDR  +G+R ++Q   GN +R  N Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]2.0e-1152.56Show/hide
Query:  QDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        QD R++ +SSSGG++  R SSPK+ GGDR   G+R + Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  QDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

KAA0040442.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1252.38Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND PQD R++ +SSSGG++  R SSPK+ GGDR  +G+R + Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

KAA0047432.1 uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]1.2e-1151.19Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND  QD R++ +SSSGG++  R SSPK+ GGDR   G+R ++Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.9e-1758.62Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERP-LSCFICKGPHRVYECPNRAALK
        +++D  Q+QR+ QASSS G++P R  SPK+GG D+ G G+R  FQ RGGN +R  N   +N R   SCFICKGPHRVYECPNRAAL+
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERP-LSCFICKGPHRVYECPNRAALK

TrEMBL top hitse value%identityAlignment
A0A5A7SUK4 Reverse transcriptase1.5e-1252.38Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND  QD R++ +SSSGG++  R SSPK+ GGDR  +G+R ++Q   GN +R  N Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

A0A5A7SW95 Retrotrans_gag domain-containing protein9.8e-1252.56Show/hide
Query:  QDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        QD R++ +SSSGG++  R SSPK+ GGDR   G+R + Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  QDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

A0A5A7TAG9 Reverse transcriptase2.0e-1252.38Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND PQD R++ +SSSGG++  R SSPK+ GGDR  +G+R + Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

A0A5A7TVD8 Reverse transcriptase domain-containing protein5.8e-1251.19Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA
        ++ND  QD R++ +SSSGG++  R SSPK+ GGDR   G+R ++Q   GN +R  + Q  + RPLSCFICKGPH   ECPN+ A
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAA

A0A6J1DLQ6 uncharacterized protein LOC1110223209.2e-1858.62Show/hide
Query:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERP-LSCFICKGPHRVYECPNRAALK
        +++D  Q+QR+ QASSS G++P R  SPK+GG D+ G G+R  FQ RGGN +R  N   +N R   SCFICKGPHRVYECPNRAAL+
Subjt:  MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERP-LSCFICKGPHRVYECPNRAALK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATGACATACCCCAAGATCAGAGACAGAATCAGGCTTCTTCGAGCGGCGGGAACAAACCCACGCGATTTAGCTCTCCCAAAAGTGGGGGAGGAGACAGAACTGG
AGCAGGTAATCGTAATACCTTCCAACCCAGAGGCGGGAATTTTTATCGGAATCTGAATCAACAGCCTTCTAATGAGAGGCCCCTGTCATGTTTCATTTGCAAGGGACCAC
ATCGAGTATACGAGTGCCCGAATCGAGCAGCCTTAAAGCTTTGCAGGCCTCATTGCTTGCTAATGTTTAACCAGAGACCGAGACTGTTGAAACGGATAAGACAAGTGAAA
CGGATAAGACATGTCCGCGAAACGGATAAGACTGTTGATTCATGTCAGATTCTTCTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAATGACATACCCCAAGATCAGAGACAGAATCAGGCTTCTTCGAGCGGCGGGAACAAACCCACGCGATTTAGCTCTCCCAAAAGTGGGGGAGGAGACAGAACTGG
AGCAGGTAATCGTAATACCTTCCAACCCAGAGGCGGGAATTTTTATCGGAATCTGAATCAACAGCCTTCTAATGAGAGGCCCCTGTCATGTTTCATTTGCAAGGGACCAC
ATCGAGTATACGAGTGCCCGAATCGAGCAGCCTTAAAGCTTTGCAGGCCTCATTGCTTGCTAATGTTTAACCAGAGACCGAGACTGTTGAAACGGATAAGACAAGTGAAA
CGGATAAGACATGTCCGCGAAACGGATAAGACTGTTGATTCATGTCAGATTCTTCTTGATTAA
Protein sequenceShow/hide protein sequence
MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAALKLCRPHCLLMFNQRPRLLKRIRQVK
RIRHVRETDKTVDSCQILLD