; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001654 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001654
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:34032657..34035327
RNA-Seq ExpressionLag0001654
SyntenyLag0001654
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4263564.1 unnamed protein product [Prunus armeniaca]8.9e-1224.7Show/hide
Query:  RYGDFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVE---------------------WQAKCE----
        R  D  T +G WD+ K+  + +  EA  I SIP+ G D  D  IW++TK G YS KSG    LE   +E                     W+ K      
Subjt:  RYGDFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVE---------------------WQAKCE----

Query:  ---W-------------------IQQYWEECRCPNG-------------------RPPSVKDVVASASAVIEPM-------PRENVSCVYIDAAVHPDRV
           W                     + WE    P+                     PP  + + A   ++  P+       P  N   + +D A   +  
Subjt:  ---W-------------------IQQYWEECRCPNG-------------------RPPSVKDVVASASAVIEPM-------PRENVSCVYIDAAVHPDRV

Query:  GVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRL
          G G  V+D HG +  AL       +S LA E++A+   +     M    + I SDSL A+ M+N E++  +A    +  ++ +    A+    H+ R 
Subjt:  GVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRL

Query:  GNRRADALAKQALRDTQSMLWLSNFPSW
         N+ A  +A+ +LRD    LWL   P W
Subjt:  GNRRADALAKQALRDTQSMLWLSNFPSW

XP_023876772.1 uncharacterized protein LOC111989214 [Quercus suber]8.3e-1027.67Show/hide
Query:  TPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAVIE
        T TG+WD++K+R++    EA  I  I I      DS IW +TK G++S K+   V                 Q W E     GR   +++ +     + E
Subjt:  TPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAVIE

Query:  PMPR---ENVSCVY---IDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKS
          P    E+ +  Y    D AV  D    G+G+ +++  G +  AL ++    L  L +E  A+   V L   + L++I I SDSL  +  L        
Subjt:  PMPR---ENVSCVY---IDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKS

Query:  AMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFP
        A+   I  +  +  + A  V VHVRR+GN  A  +A++A      ++W+ + P
Subjt:  AMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFP

XP_023880941.1 uncharacterized protein LOC111993328 [Quercus suber]4.9e-1026.62Show/hide
Query:  TGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLE----------------------KPIVEWQA--------------
        TG+WD++K+R++    EA  I  I I      DS IW  TK G++S KS   V  +                      KP +EW++              
Subjt:  TGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLE----------------------KPIVEWQA--------------

Query:  -----KCEW-------IQQYWEECRCPNGRPPSVKDVVASASAVIEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAE
             KC+        I  Y +E +  N  P    DV    S      PR     V  D AV  D    G+G+ +++  G +  AL +     L  L +E
Subjt:  -----KCEW-------IQQYWEECRCPNGRPPSVKDVVASASAVIEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAE

Query:  VFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFP
          A+   V L   + L++I I SDSL  I  L        A+   I  +    + F     VHVRR+GN  A  +A++A      ++W+ + P
Subjt:  VFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFP

XP_030503504.1 uncharacterized protein LOC115718825 [Cannabis sativa]1.3e-1022.26Show/hide
Query:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSG----NNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSV-----
        D+ITP   WD+ +L N  +  +   I  IP+    ++D++IWHYT  G Y+ +SG     ++  +       ++ +W + +W   + P+  P  V     
Subjt:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSG----NNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSV-----

Query:  --------KDVVASASAVIEPMPRENVSCVY-------------------------------------------IDAAVHPDRVGVGIGVNVQDGHGTVR
                  VV + + V+   P +  + ++                                           +DAAV   +  +G G  ++D  G V 
Subjt:  --------KDVVASASAVIEPMPRENVSCVY-------------------------------------------IDAAVHPDRVGVGIGVNVQDGHGTVR

Query:  AALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDT
        AAL + +   L     E  A+F  ++    M L+   I +DSL  ++ ++            +  ++ +   F N+   HVRR  N+ A  LAKQAL   
Subjt:  AALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDT

Query:  QSMLWLSNFP
           +WL   P
Subjt:  QSMLWLSNFP

XP_030958731.1 uncharacterized protein LOC115980640 [Quercus lobata]1.3e-1027.6Show/hide
Query:  FITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAV
        F   T  WD   L       EA LI++IPI     ED  IW  T  G YS +S  ++L E          +  +Q        N        +  +++  
Subjt:  FITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAV

Query:  IEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHH
        I   P++       DAA+  D    G+GV ++D HG V AAL Q   +  S  AAE  A    V     + +  +I+  D L  ++ L  ++   +   +
Subjt:  IEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHH

Query:  WITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFPS
         I   +  S       F HVRR GN+ A ALA +A+      +W+ + PS
Subjt:  WITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFPS

TrEMBL top hitse value%identityAlignment
A0A6J5TIF9 Reverse transcriptase domain-containing protein4.3e-1224.7Show/hide
Query:  RYGDFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVE---------------------WQAKCE----
        R  D  T +G WD+ K+  + +  EA  I SIP+ G D  D  IW++TK G YS KSG    LE   +E                     W+ K      
Subjt:  RYGDFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVE---------------------WQAKCE----

Query:  ---W-------------------IQQYWEECRCPNG-------------------RPPSVKDVVASASAVIEPM-------PRENVSCVYIDAAVHPDRV
           W                     + WE    P+                     PP  + + A   ++  P+       P  N   + +D A   +  
Subjt:  ---W-------------------IQQYWEECRCPNG-------------------RPPSVKDVVASASAVIEPM-------PRENVSCVYIDAAVHPDRV

Query:  GVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRL
          G G  V+D HG +  AL       +S LA E++A+   +     M    + I SDSL A+ M+N E++  +A    +  ++ +    A+    H+ R 
Subjt:  GVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRL

Query:  GNRRADALAKQALRDTQSMLWLSNFPSW
         N+ A  +A+ +LRD    LWL   P W
Subjt:  GNRRADALAKQALRDTQSMLWLSNFPSW

A0A803NG99 Uncharacterized protein6.2e-1122.26Show/hide
Query:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSG----NNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSV-----
        D+ITP   WD+ +L N  +  +   I  IP+    ++D++IWHYT  G Y+ +SG     ++  +       ++ +W + +W   + P+  P  V     
Subjt:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSG----NNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSV-----

Query:  --------KDVVASASAVIEPMPRENVSCVY-------------------------------------------IDAAVHPDRVGVGIGVNVQDGHGTVR
                  VV + + V+   P +  + ++                                           +DAAV   +  +G G  ++D  G V 
Subjt:  --------KDVVASASAVIEPMPRENVSCVY-------------------------------------------IDAAVHPDRVGVGIGVNVQDGHGTVR

Query:  AALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDT
        AAL + +   L     E  A+F  ++    M L+   I +DSL  ++ ++            +  ++ +   F N+   HVRR  N+ A  LAKQAL   
Subjt:  AALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDT

Query:  QSMLWLSNFP
           +WL   P
Subjt:  QSMLWLSNFP

A0A803PIB6 Uncharacterized protein2.2e-0830.67Show/hide
Query:  PSVKDVVASASAVIEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKM
        P+V  V A A  V    P E+   + +DAA+   R  +GIGV ++D  G V AA+ +           E  A+F  ++   ++QL+   + +D L  +  
Subjt:  PSVKDVVASASAVIEPMPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKM

Query:  LNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFPS
        L  +Q   S+ H  +  I      F+N    HVRR  N+ A  LAKQAL+     +W+   PS
Subjt:  LNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFPS

A0A803PIB6 Uncharacterized protein4.3e-0439.66Show/hide
Query:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNV
        D+IT T  WD+E L N  +  +   I +IP+      D W WHY   G+Y+ KSG N+
Subjt:  DFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNV

A0A803PIB6 Uncharacterized protein2.2e-0823.31Show/hide
Query:  EWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAVIEPM-----------------PRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEA
        +W A+ +W+ +         G+  + + VVA A AV+E                   P+E    +  DAA + ++   G+G  ++D +G V A  ++   
Subjt:  EWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAVIEPM-----------------PRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEA

Query:  RLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSN
           S   AE  A+   +++     +KD+I+ SDS   + ++N  Q ++S ++  + +IQ + + F ++  V+  R  N  A +LAK AL   ++++W  +
Subjt:  RLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRADALAKQALRDTQSMLWLSN

Query:  FPSWGRRGLQNGKPAHRCVVLATPPPMLKSETEGGELERIQRRFETNQVESGRPEAVGTKRSRGSALAEAEQWPDSFSLGLSHLPVLPLGSIPQLF
        +P      LQ  +P     +    PP+ K ET     + I   ++   + S     +   +  G    +        +L LSH  +  +GSIP  F
Subjt:  FPSWGRRGLQNGKPAHRCVVLATPPPMLKSETEGGELERIQRRFETNQVESGRPEAVGTKRSRGSALAEAEQWPDSFSLGLSHLPVLPLGSIPQLF

A0A803PM23 Uncharacterized protein5.3e-1026.7Show/hide
Query:  DSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVV-ASASAVIEPM-------PRENVSCVYIDAAVHPDRVGVGIG
        D  +WH+T  G Y+  SG  V +   + E +A  + I + W         PP V++ +    +  + P        P+  V C+  DA+V  + V  G+G
Subjt:  DSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVV-ASASAVIEPM-------PRENVSCVYIDAAVHPDRVGVGIG

Query:  VNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRA
          +++  G V AA +Q +    S   AEV A+   + L  +M     II +D L  +  LN     K+     +  I+   ++   +   H+ R  NR A
Subjt:  VNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFANMVFVHVRRLGNRRA

Query:  DALAKQALRDTQSMLWLSNFP
        ++LAK+AL    + LW   +P
Subjt:  DALAKQALRDTQSMLWLSNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATGAGGTATGGAGACTTTATCACCCCGACTGGGGCATGGGATATGGAGAAACTAAGAAATGCAGTGAATGAGGAGGAGGCGCTTTTGATCCAATCAATTCCGAT
TGGTGGGTGTGATGAGGAGGATTCGTGGATTTGGCATTATACTAAGCAGGGTGAGTATTCTACTAAGAGTGGGAATAATGTCCTTTTGGAAAAGCCTATTGTGGAGTGGC
AAGCTAAGTGCGAATGGATTCAGCAATATTGGGAAGAATGTAGATGTCCTAATGGTCGGCCTCCATCGGTGAAGGACGTCGTCGCTTCTGCATCTGCTGTGATCGAGCCC
ATGCCGCGTGAGAATGTATCGTGTGTGTATATTGATGCTGCCGTCCATCCTGACAGAGTGGGAGTTGGGATTGGAGTGAATGTGCAGGATGGCCATGGTACTGTTCGTGC
TGCGTTGGTTCAATTTGAAGCTCGTTTGCTGTCCCCTTTAGCGGCAGAAGTTTTTGCGATCTTTACTGTTGTTCGTCTTTTGTCTAGGATGCAGTTAAAGGATATTATAA
TATACTCTGACTCTCTTGCTGCTATTAAGATGTTGAATCGAGAGCAAGATACGAAATCTGCTATGCATCATTGGATTACTCAAATTCAAGGGATGAGTCAATATTTTGCT
AACATGGTTTTCGTTCATGTTCGTAGACTTGGGAATCGACGGGCGGATGCTTTAGCTAAGCAAGCTCTTCGTGATACACAATCTATGTTATGGTTGTCCAATTTTCCTTC
TTGGGGAAGACGTGGCCTGCAAAATGGTAAACCTGCACACCGGTGCGTGGTGTTAGCCACACCGCCTCCGATGCTTAAGTCAGAAACGGAAGGAGGAGAGCTAGAGAGGA
TTCAGAGGCGCTTCGAGACAAATCAGGTTGAATCCGGGAGGCCAGAGGCGGTGGGGACCAAGCGGAGCCGAGGGTCGGCTTTGGCCGAGGCCGAGCAGTGGCCCGACTCC
TTCAGTCTTGGTCTATCCCACTTGCCGGTTTTGCCTCTTGGGTCCATTCCTCAGCTCTTTTTCTGCCCGGTTGTCCTCGTTAGCTCCTTGTACATCGGAGTGGTCCAAAA
TTACCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATGAGGTATGGAGACTTTATCACCCCGACTGGGGCATGGGATATGGAGAAACTAAGAAATGCAGTGAATGAGGAGGAGGCGCTTTTGATCCAATCAATTCCGAT
TGGTGGGTGTGATGAGGAGGATTCGTGGATTTGGCATTATACTAAGCAGGGTGAGTATTCTACTAAGAGTGGGAATAATGTCCTTTTGGAAAAGCCTATTGTGGAGTGGC
AAGCTAAGTGCGAATGGATTCAGCAATATTGGGAAGAATGTAGATGTCCTAATGGTCGGCCTCCATCGGTGAAGGACGTCGTCGCTTCTGCATCTGCTGTGATCGAGCCC
ATGCCGCGTGAGAATGTATCGTGTGTGTATATTGATGCTGCCGTCCATCCTGACAGAGTGGGAGTTGGGATTGGAGTGAATGTGCAGGATGGCCATGGTACTGTTCGTGC
TGCGTTGGTTCAATTTGAAGCTCGTTTGCTGTCCCCTTTAGCGGCAGAAGTTTTTGCGATCTTTACTGTTGTTCGTCTTTTGTCTAGGATGCAGTTAAAGGATATTATAA
TATACTCTGACTCTCTTGCTGCTATTAAGATGTTGAATCGAGAGCAAGATACGAAATCTGCTATGCATCATTGGATTACTCAAATTCAAGGGATGAGTCAATATTTTGCT
AACATGGTTTTCGTTCATGTTCGTAGACTTGGGAATCGACGGGCGGATGCTTTAGCTAAGCAAGCTCTTCGTGATACACAATCTATGTTATGGTTGTCCAATTTTCCTTC
TTGGGGAAGACGTGGCCTGCAAAATGGTAAACCTGCACACCGGTGCGTGGTGTTAGCCACACCGCCTCCGATGCTTAAGTCAGAAACGGAAGGAGGAGAGCTAGAGAGGA
TTCAGAGGCGCTTCGAGACAAATCAGGTTGAATCCGGGAGGCCAGAGGCGGTGGGGACCAAGCGGAGCCGAGGGTCGGCTTTGGCCGAGGCCGAGCAGTGGCCCGACTCC
TTCAGTCTTGGTCTATCCCACTTGCCGGTTTTGCCTCTTGGGTCCATTCCTCAGCTCTTTTTCTGCCCGGTTGTCCTCGTTAGCTCCTTGTACATCGGAGTGGTCCAAAA
TTACCTATAA
Protein sequenceShow/hide protein sequence
MGMRYGDFITPTGAWDMEKLRNAVNEEEALLIQSIPIGGCDEEDSWIWHYTKQGEYSTKSGNNVLLEKPIVEWQAKCEWIQQYWEECRCPNGRPPSVKDVVASASAVIEP
MPRENVSCVYIDAAVHPDRVGVGIGVNVQDGHGTVRAALVQFEARLLSPLAAEVFAIFTVVRLLSRMQLKDIIIYSDSLAAIKMLNREQDTKSAMHHWITQIQGMSQYFA
NMVFVHVRRLGNRRADALAKQALRDTQSMLWLSNFPSWGRRGLQNGKPAHRCVVLATPPPMLKSETEGGELERIQRRFETNQVESGRPEAVGTKRSRGSALAEAEQWPDS
FSLGLSHLPVLPLGSIPQLFFCPVVLVSSLYIGVVQNYL