; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001656 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001656
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:34043256..34043960
RNA-Seq ExpressionLag0001656
SyntenyLag0001656
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMP06477.1 hypothetical protein CCACVL1_01552 [Corchorus capsularis]2.6e-1733.64Show/hide
Query:  RVATVCWSIWNDRNKITHGD--KIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDAC-SKSSSSTGLGILCRDGV
        RV T+ W +W + N+  +     +P   +R        +   Q  A +SRI E    +   S+ + W PPP G  K+NTDA  S  +   GLG++ RD V
Subjt:  RVATVCWSIWNDRNKITHGD--KIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDAC-SKSSSSTGLGILCRDGV

Query:  GNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHA
        GN + + +  L F  D   AE+ +IL G  +AL+ G     VESDS +AI+ I K   V+ +   +I +I +L   F   SF+FVNR    EA+ LA   
Subjt:  GNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHA

Query:  RTHRINETWVNQSP
           R++  W    P
Subjt:  RTHRINETWVNQSP

VAH43766.1 unnamed protein product [Triticum turgidum subsp. durum]4.4e-1730.14Show/hide
Query:  WSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSF----FQASAKSSRIEE--------ENHHRRQI-SQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILC
        W IW+ RN++ H    PP+    +++  YL S        S+  S+ +         +N H R + S +V W PP AG+ KLNTD     + + G G++ 
Subjt:  WSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSF----FQASAKSSRIEE--------ENHHRRQI-SQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILC

Query:  RDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNL
        RD  GN + ++   L    ++  AEL + +EG++ A++   + + +E DS +A+K I    +  S    ++++I  L+    S     +NR+ NK +D+L
Subjt:  RDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNL

Query:  AKHARTHRINETWVNQSPS
        AK AR      TWV   PS
Subjt:  AKHARTHRINETWVNQSPS

XP_010686484.1 PREDICTED: uncharacterized protein LOC104900691 [Beta vulgaris subsp. vulgaris]5.8e-1730.32Show/hide
Query:  ATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVP----WSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVG
        A + W IW +RN +    KI P  I     + + K +   SA        N + R +  +VP    W+ PP G +KLN DA        GLG++ RD  G
Subjt:  ATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVP----WSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVG

Query:  NCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHAR
        +   A+T  +  Y    LAE K+I  G+ L  ++G   + +ESD Q+ I+ +   +   S+ +V + DI+    +F SIS+  V R  N  A +LAK   
Subjt:  NCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHAR

Query:  THRINETWVNQSPSWLCNWAL
             + W N  P+ +  + L
Subjt:  THRINETWVNQSPSWLCNWAL

XP_021720632.1 uncharacterized protein LOC110688193 [Chenopodium quinoa]4.4e-1730.59Show/hide
Query:  RVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVGNC
        R A + W IW +RN     DK  P  +    +    K+  +    S ++   +  ++Q S    W+PPP G  KLN+DA        G+G++ RD  GN 
Subjt:  RVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVGNC

Query:  MVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHARTH
        + A+T  +  +    +AE K++L  + LA ++G  N+ +ESD+Q+ I  + K  V  SD +VV+ DI      F S  +  V R  N  A +LAK     
Subjt:  MVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHARTH

Query:  RINETWVNQSPSWLCNWAL
         + + WVN  P  +  + L
Subjt:  RINETWVNQSPSWLCNWAL

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.2e-2332.42Show/hide
Query:  EDVGRVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDG
        +D+   A   W IWNDRN + HG ++ P+  + +W+  +L S  QA   +     +++HR  +     W P  +   KLNTDA  +  +ST  G + RD 
Subjt:  EDVGRVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDG

Query:  VGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKH
          + + A++I + F +   LAE++ ILEG+  A      +L VESDS +AI+ I  +I    D +  + +I  L   F+ ISF   +R  N+ A  LAK 
Subjt:  VGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKH

Query:  ARTH-RINETWVNQSPSWL
          T       W+   P+WL
Subjt:  ARTH-RINETWVNQSPSWL

TrEMBL top hitse value%identityAlignment
A0A1R3KHA2 Uncharacterized protein1.3e-1733.64Show/hide
Query:  RVATVCWSIWNDRNKITHGD--KIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDAC-SKSSSSTGLGILCRDGV
        RV T+ W +W + N+  +     +P   +R        +   Q  A +SRI E    +   S+ + W PPP G  K+NTDA  S  +   GLG++ RD V
Subjt:  RVATVCWSIWNDRNKITHGD--KIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDAC-SKSSSSTGLGILCRDGV

Query:  GNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHA
        GN + + +  L F  D   AE+ +IL G  +AL+ G     VESDS +AI+ I K   V+ +   +I +I +L   F   SF+FVNR    EA+ LA   
Subjt:  GNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHA

Query:  RTHRINETWVNQSP
           R++  W    P
Subjt:  RTHRINETWVNQSP

A0A446M1X1 RNase H domain-containing protein2.2e-1730.14Show/hide
Query:  WSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSF----FQASAKSSRIEE--------ENHHRRQI-SQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILC
        W IW+ RN++ H    PP+    +++  YL S        S+  S+ +         +N H R + S +V W PP AG+ KLNTD     + + G G++ 
Subjt:  WSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSF----FQASAKSSRIEE--------ENHHRRQI-SQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILC

Query:  RDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNL
        RD  GN + ++   L    ++  AEL + +EG++ A++   + + +E DS +A+K I    +  S    ++++I  L+    S     +NR+ NK +D+L
Subjt:  RDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNL

Query:  AKHARTHRINETWVNQSPS
        AK AR      TWV   PS
Subjt:  AKHARTHRINETWVNQSPS

A0A6J1BQ49 uncharacterized protein LOC1110047861.5e-1535.53Show/hide
Query:  ATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVP----WSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVG
        A   W+IW DRN   HG  +    +R  WI  Y +++ QA       +E      Q S + P    W PP     K+N+DA  + S+STGLG++ RD  G
Subjt:  ATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVP----WSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVG

Query:  NCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFI
          +VA ++FL   ++   AE++ ILE + LA       L VESD Q AI+ +
Subjt:  NCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFI

A0A6J1DX30 uncharacterized protein LOC1110248741.5e-2332.42Show/hide
Query:  EDVGRVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDG
        +D+   A   W IWNDRN + HG ++ P+  + +W+  +L S  QA   +     +++HR  +     W P  +   KLNTDA  +  +ST  G + RD 
Subjt:  EDVGRVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDG

Query:  VGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKH
          + + A++I + F +   LAE++ ILEG+  A      +L VESDS +AI+ I  +I    D +  + +I  L   F+ ISF   +R  N+ A  LAK 
Subjt:  VGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKH

Query:  ARTH-RINETWVNQSPSWL
          T       W+   P+WL
Subjt:  ARTH-RINETWVNQSPSWL

A0A803QGC3 Uncharacterized protein4.1e-1637.25Show/hide
Query:  QIVPWSPPPAGFWKLNTDA-CSKSSSSTGLGILCRDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSD
        QI  W PPP G + +NTDA     S   G+  + RD  G  +VA+T FL   M V LA+  +IL G+NLA +W   N+ V SDSQ  IK +  +    +D
Subjt:  QIVPWSPPPAGFWKLNTDA-CSKSSSSTGLGILCRDGVGNCMVASTIFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSD

Query:  PEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHARTHRINETWVNQSPS
           ++ +I  L   F S++F F +R  NK A++LA  +R    +E W +  P+
Subjt:  PEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHARTHRINETWVNQSPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATGTAGGGCGAGTGGCTACAGTTTGTTGGTCTATATGGAACGACCGAAACAAAATCACACATGGGGATAAGATTCCTCCTATTCACATCAGGGGAAAGTGGAT
TGATGAGTACCTGAAGTCCTTTTTCCAAGCGTCTGCTAAATCTTCTCGTATTGAGGAGGAGAATCATCATCGCCGCCAAATTAGTCAAATTGTTCCCTGGTCCCCTCCCC
CAGCAGGGTTCTGGAAGCTTAACACAGATGCTTGCTCCAAATCCTCTTCTTCGACTGGCTTGGGAATTTTATGCAGAGATGGAGTTGGAAATTGCATGGTAGCGTCCACC
ATTTTCCTTGATTTCTATATGGATGTTTATCTAGCAGAACTAAAGAGTATTCTGGAGGGTATGAATTTGGCGTTAAAGTGGGGCTGTGTGAATTTGCATGTCGAATCTGA
TAGTCAGATGGCCATAAAATTCATTCTAAAGAAGATTGTTGTTTGGAGTGATCCGGAAGTTGTCATCAGGGATATCTGGGATTTAGTTCCTTTTTTTTCGAGCATTTCCT
TTAAATTTGTTAATCGGTTGTTTAATAAGGAAGCCGATAATCTTGCAAAACATGCTAGGACTCATAGAATCAATGAGACTTGGGTCAATCAAAGCCCAAGCTGGCTGTGT
AATTGGGCCTTGTATGGCCATTTTGCTGATGCCCATGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATGTAGGGCGAGTGGCTACAGTTTGTTGGTCTATATGGAACGACCGAAACAAAATCACACATGGGGATAAGATTCCTCCTATTCACATCAGGGGAAAGTGGAT
TGATGAGTACCTGAAGTCCTTTTTCCAAGCGTCTGCTAAATCTTCTCGTATTGAGGAGGAGAATCATCATCGCCGCCAAATTAGTCAAATTGTTCCCTGGTCCCCTCCCC
CAGCAGGGTTCTGGAAGCTTAACACAGATGCTTGCTCCAAATCCTCTTCTTCGACTGGCTTGGGAATTTTATGCAGAGATGGAGTTGGAAATTGCATGGTAGCGTCCACC
ATTTTCCTTGATTTCTATATGGATGTTTATCTAGCAGAACTAAAGAGTATTCTGGAGGGTATGAATTTGGCGTTAAAGTGGGGCTGTGTGAATTTGCATGTCGAATCTGA
TAGTCAGATGGCCATAAAATTCATTCTAAAGAAGATTGTTGTTTGGAGTGATCCGGAAGTTGTCATCAGGGATATCTGGGATTTAGTTCCTTTTTTTTCGAGCATTTCCT
TTAAATTTGTTAATCGGTTGTTTAATAAGGAAGCCGATAATCTTGCAAAACATGCTAGGACTCATAGAATCAATGAGACTTGGGTCAATCAAAGCCCAAGCTGGCTGTGT
AATTGGGCCTTGTATGGCCATTTTGCTGATGCCCATGTGGCGTAA
Protein sequenceShow/hide protein sequence
MEDVGRVATVCWSIWNDRNKITHGDKIPPIHIRGKWIDEYLKSFFQASAKSSRIEEENHHRRQISQIVPWSPPPAGFWKLNTDACSKSSSSTGLGILCRDGVGNCMVAST
IFLDFYMDVYLAELKSILEGMNLALKWGCVNLHVESDSQMAIKFILKKIVVWSDPEVVIRDIWDLVPFFSSISFKFVNRLFNKEADNLAKHARTHRINETWVNQSPSWLC
NWALYGHFADAHVA