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Lag0001666 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001666
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:34116285..34117076
RNA-Seq ExpressionLag0001666
SyntenyLag0001666
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021721253.1 uncharacterized protein LOC110688807 [Chenopodium quinoa]2.2e-1229.41Show/hide
Query:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVG
        W  +   L    +   I + W +W ARN   ++  + DP  V R  L  IEE+ E  S  +    T     S+ + W++      K+N DA +  + G  
Subjt:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVG

Query:  GLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI
        GLG  IR+  G+V+ AG ++  + W ++  EA+AIL GL++    G  E       ++VESD L+VI  +  +    SE   ++++I
Subjt:  GLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.2e-1631.72Show/hide
Query:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSIL----NNIEE---IIEGRSKYLNSTQLETHSSHLH-----WESSGAECWKLNAD
        W+ +   LS EE+  ++++ W +W +RN S  + +  D  Q+ RSI+    +NI++   I + R    N   L     +L+     W +    CWKLN D
Subjt:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSIL----NNIEE---IIEGRSKYLNSTQLETHSSHLH-----WESSGAECWKLNAD

Query:  ASWFEKEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIED
        ASW E+  VGG+GW + +  G ++ AG  KI +   I  LE   I+ GL+   +       + + P+ +ESDS+EVI  + +E  D
Subjt:  ASWFEKEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIED

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.1e-1531.52Show/hide
Query:  KEEIERAILVLWNLWTARNISNIKNQKPDPNQVY----RSILNNI--EEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLG
        +EE  R++++ W +W  RN S  K   P+   +     R I+N+      ++G+S  K L+  +    ++   W+   +  WKLN +A+W      GG+G
Subjt:  KEEIERAILVLWNLWTARNISNIKNQKPDPNQVY----RSILNNI--EEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLG

Query:  WTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI
        W +R+  G VI A C+ I     I  LE  AI EGL+          +    P+ +ESDSLE I  ++R+ +DQ+E+ +++EEI
Subjt:  WTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-1431.89Show/hide
Query:  SKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQL----ETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTI
        S E+++  ++  W +W  RN    + +    + + + +   + E     S Y + T L    +T ++ L WE      W LNADASW +    GG+GW I
Subjt:  SKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQL----ETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTI

Query:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVR
        R+ +G ++ AG + +     +K LEA AILEGL+     G +       PL +E+DS EV   +NR+ ED ++  ++VEEI  +R
Subjt:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.4e-1631.25Show/hide
Query:  KEEIERAILVLWNLWTARNISNIKNQKPDPNQVY----RSILNNI--EEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLG
        +EE  R++++ W +W  RN S  K    +   +     R I+N+   +  ++G+S  K L+  +    ++   W+   +  WKLN DA+W      GG+G
Subjt:  KEEIERAILVLWNLWTARNISNIKNQKPDPNQVY----RSILNNI--EEIIEGRS--KYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLG

Query:  WTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLK-IYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI------EKVRLTLRL
        W +R+  G VI A C+ I     I  LE  AI EGL+ I + H     +    P+ +ESDSLE I  ++R+ +DQ+E+ +++EEI       K+     +
Subjt:  WTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLK-IYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEI------EKVRLTLRL

Query:  SRSPNALA
        SR  N +A
Subjt:  SRSPNALA

TrEMBL top hitse value%identityAlignment
A0A1J6KXM4 Putative ribonuclease h protein (Fragment)1.1e-0930.23Show/hide
Query:  IWDQMQRSLSKEEIERAILV---LWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEG
        +W  ++     E ++ AI++   LW++W  RN +N+ N K DP     +  N + +  E +    NS    TH   L WE     C+KLN D +   K G
Subjt:  IWDQMQRSLSKEEIERAILV---LWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEG

Query:  VGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTI
        +GG G  +RN NGS +  G  +   + +    E  A+L GL++ E       + +  PL +++DS E+IG +
Subjt:  VGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTI

A0A1S8ADA4 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment)2.4e-0930.22Show/hide
Query:  KEEIERAILVLWNLWTARNISNIKNQKPDP-NQVYRSILNNIEEIIEG--RSKYLNSTQLETHS--SHLHWESSGAECWKLNADASWFEKEGVGGLGWTI
        K E+E  + V W +W +RN    + +  DP N V R+I      ++E   R K  N      HS  S L W +    C+K+N DA+        GLG  I
Subjt:  KEEIERAILVLWNLWTARNISNIKNQKPDP-NQVYRSILNNIEEIIEG--RSKYLNSTQLETHS--SHLHWESSGAECWKLNADASWFEKEGVGGLGWTI

Query:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIE
        RNS G V+ A  +       + C+EAEA+L G++  +       +    P+++ESDS EV+    ++   ++E+ + + EI+
Subjt:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIE

A0A6J1CQG0 uncharacterized protein LOC1110132161.6e-1631.72Show/hide
Query:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSIL----NNIEE---IIEGRSKYLNSTQLETHSSHLH-----WESSGAECWKLNAD
        W+ +   LS EE+  ++++ W +W +RN S  + +  D  Q+ RSI+    +NI++   I + R    N   L     +L+     W +    CWKLN D
Subjt:  WDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSIL----NNIEE---IIEGRSKYLNSTQLETHSSHLH-----WESSGAECWKLNAD

Query:  ASWFEKEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIED
        ASW E+  VGG+GW + +  G ++ AG  KI +   I  LE   I+ GL+   +       + + P+ +ESDS+EVI  + +E  D
Subjt:  ASWFEKEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIED

A0A6J1DNV9 uncharacterized protein LOC1110224035.0e-1531.89Show/hide
Query:  SKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQL----ETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTI
        S E+++  ++  W +W  RN    + +    + + + +   + E     S Y + T L    +T ++ L WE      W LNADASW +    GG+GW I
Subjt:  SKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQL----ETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTI

Query:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVR
        R+ +G ++ AG + +     +K LEA AILEGL+     G +       PL +E+DS EV   +NR+ ED ++  ++VEEI  +R
Subjt:  RNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVR

V4WCI4 RNase H domain-containing protein (Fragment)2.4e-0927.8Show/hide
Query:  MQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWT
        +  SL KE+ E  + + W++W  RN++    +  D +          +   + +   + S       +   W S     ++LN+DA+  E +G+ GLG  
Subjt:  MQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWT

Query:  IRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEK------VRLTLRLSRS
        IRNS G  + A                 AILEG+K+ E  G I       PLVVESDSL VI  +++ I    E+ +++ E+ +      V     +SRS
Subjt:  IRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEK------VRLTLRLSRS

Query:  PNALA
         N+ A
Subjt:  PNALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.6e-0523.12Show/hide
Query:  QMQRSLSKEEIERAI--LVLWNLWTARNISNIKNQKPDPNQVYRSILN------NIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECW-KLNADASWFE
        Q+ ++ +   ++R +   ++W LW +RN+   + +   P+   R  +       N  E  E  + ++ +  ++T        +   E W K N D+ + +
Subjt:  QMQRSLSKEEIERAI--LVLWNLWTARNISNIKNQKPDPNQVYRSILN------NIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECW-KLNADASWFE

Query:  KEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVRLTL
               GWTIR  NG ++  G  K+         EA   L  L++   HG          +  ESDS  ++  IN   ED S L  ++ +I    L L
Subjt:  KEGVGGLGWTIRNSNGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVRLTL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0628.43Show/hide
Query:  VLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEG--RSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTIRNSNGSVIGAGC
        ++W +W + N     + +          LN+ +E ++    ++  N  +    S +  W   G +  K N DAS  E+  V GLGW +RNS G+VI  G 
Subjt:  VLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEG--RSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTIRNSNGSVIGAGC

Query:  KK
         K
Subjt:  KK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTTGGGACCAAATGCAAAGGAGCTTGAGCAAGGAGGAGATCGAAAGGGCAATTCTAGTCTTATGGAACTTATGGACAGCAAGAAACATAAGTAATATAAAAAA
TCAGAAGCCAGATCCCAACCAAGTATACAGATCAATTCTCAATAACATTGAAGAAATCATTGAAGGTAGATCGAAGTACCTGAACTCCACGCAATTAGAGACCCATTCAA
GTCATCTTCATTGGGAGTCGTCGGGTGCCGAATGCTGGAAGCTAAACGCTGATGCTTCATGGTTCGAGAAAGAAGGCGTCGGAGGCCTAGGTTGGACCATACGTAACTCT
AACGGATCTGTAATCGGAGCGGGTTGCAAGAAAATCACTAAATTTTGGGCGATCAAGTGTCTTGAAGCGGAAGCCATTTTGGAGGGCCTGAAAATTTATGAGATCCACGG
CGAGATCGAGGGAAGAAGAAGAAAGCCACCGCTGGTTGTTGAATCCGACTCTCTCGAAGTAATTGGAACCATCAATCGCGAAATTGAAGACCAATCGGAGCTCTGTTTTA
TCGTGGAAGAAATCGAAAAAGTGAGGCTCACTCTCAGATTATCTCGTTCTCCAAATGCCCTCGCAAGTGTAATGGGTTGGCTCATGAGCTCGCACGCGCTGGAGCGGTTC
ATGGCGGATGTGGGTTTTTTTGGTCACTCTCTCCTTCCTCGTGAAGAAGACGAAGTGTTTGGGAGGGAATCCCCTTTCCCCTCTTGGTTCTCATCAATTTTCCCTGATGA
GGTTAACAGTTTCTTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTTGGGACCAAATGCAAAGGAGCTTGAGCAAGGAGGAGATCGAAAGGGCAATTCTAGTCTTATGGAACTTATGGACAGCAAGAAACATAAGTAATATAAAAAA
TCAGAAGCCAGATCCCAACCAAGTATACAGATCAATTCTCAATAACATTGAAGAAATCATTGAAGGTAGATCGAAGTACCTGAACTCCACGCAATTAGAGACCCATTCAA
GTCATCTTCATTGGGAGTCGTCGGGTGCCGAATGCTGGAAGCTAAACGCTGATGCTTCATGGTTCGAGAAAGAAGGCGTCGGAGGCCTAGGTTGGACCATACGTAACTCT
AACGGATCTGTAATCGGAGCGGGTTGCAAGAAAATCACTAAATTTTGGGCGATCAAGTGTCTTGAAGCGGAAGCCATTTTGGAGGGCCTGAAAATTTATGAGATCCACGG
CGAGATCGAGGGAAGAAGAAGAAAGCCACCGCTGGTTGTTGAATCCGACTCTCTCGAAGTAATTGGAACCATCAATCGCGAAATTGAAGACCAATCGGAGCTCTGTTTTA
TCGTGGAAGAAATCGAAAAAGTGAGGCTCACTCTCAGATTATCTCGTTCTCCAAATGCCCTCGCAAGTGTAATGGGTTGGCTCATGAGCTCGCACGCGCTGGAGCGGTTC
ATGGCGGATGTGGGTTTTTTTGGTCACTCTCTCCTTCCTCGTGAAGAAGACGAAGTGTTTGGGAGGGAATCCCCTTTCCCCTCTTGGTTCTCATCAATTTTCCCTGATGA
GGTTAACAGTTTCTTTCAATGA
Protein sequenceShow/hide protein sequence
MEIWDQMQRSLSKEEIERAILVLWNLWTARNISNIKNQKPDPNQVYRSILNNIEEIIEGRSKYLNSTQLETHSSHLHWESSGAECWKLNADASWFEKEGVGGLGWTIRNS
NGSVIGAGCKKITKFWAIKCLEAEAILEGLKIYEIHGEIEGRRRKPPLVVESDSLEVIGTINREIEDQSELCFIVEEIEKVRLTLRLSRSPNALASVMGWLMSSHALERF
MADVGFFGHSLLPREEDEVFGRESPFPSWFSSIFPDEVNSFFQ