; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001704 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001704
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:34500998..34502172
RNA-Seq ExpressionLag0001704
SyntenyLag0001704
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]3.6e-6334.53Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ +GG  R ++FW+PV+D +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++PIGV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        E+  R FLW+G +  K  HLVRW +V KSK       G    RN     KW                                    C +PW++I+K   
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL
         F    ++ +G   K +FW+D WL E  LK  FP ++ LS  K+  +    N+    + WD   RR L + E+ E ++L  +L N RL  S  D   W++
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        +  G FS KS  + F   +T +       IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+ C  + E   HL +HC ++
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

RVW53692.1 putative ribonuclease H protein [Vitis vinifera]4.3e-6437.43Show/hide
Query:  MHKTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSK
        ++K++I GIN+D   L+ +A+M+ CK    P  YLG+ +GG  +   FWDPVV+ I ++L  W    +S GGR TLI++ L  +P+YF+ +F++P  V+ 
Subjt:  MHKTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSK

Query:  EIEKAFRRFLWKGGDGDKRSHLVRWDKVIKSK-FGKQFIRNHLDFKKWKCCSSPWKDIAKLASVFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMF
        +IE+  R FLW G    KR HLVRWD V K K  G ++          +C   PWK IA++   F +  +Y +G  ++ +FW+D W  + PL  Q+P +F
Subjt:  EIEKAFRRFLWKGGDGDKRSHLVRWDKVIKSK-FGKQFIRNHLDFKKWKCCSSPWKDIAKLASVFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMF

Query:  KLSLAKDATVQNLW---NDVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNR
        ++ + K+ ++ ++        W+L  RR L D E+ +   L   L++  L+ S  D   W L  SG FSVKS        S    +  S  +W  +VP +
Subjt:  KLSLAKDATVQNLW---NDVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNR

Query:  VKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC
        VK F+W VAHK +NT D +Q R P  ++SP+IC+LC +  E+A HL LHC
Subjt:  VKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC

RVW87607.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.6e-6336.21Show/hide
Query:  MHKTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSK
        ++K++I GIN+D   L+ +A+M+ CK    P  YLG+ +GG  +   FWDPVV+ I ++L  W    +S GGR TLI++ L  +P+YF+ +F++P  V+ 
Subjt:  MHKTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSK

Query:  EIEKAFRRFLWKGGDGDKRSHLVRWDKVIKSKFGKQFIRNHLDFKK----WKCCS------SPWKDIAKLASVFKVNRKYKIGRENKAQFWDDCWLIENP
        +IE+  R FLW G    KR HLVRWD V + K        ++ ++      KC         PWK IA++   F +  +Y +G  ++ +FW+D W  + P
Subjt:  EIEKAFRRFLWKGGDGDKRSHLVRWDKVIKSKFGKQFIRNHLDFKK----WKCCS------SPWKDIAKLASVFKVNRKYKIGRENKAQFWDDCWLIENP

Query:  LKIQFPGMFKLSLAKDATVQNLWN---DVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTLQVFQARSTVLDDSLSPQ
        L  Q+P +F++ + K+ ++ ++        W+L  RR L D E+ +   L   L++  L+ S  D   W L  SG FSVKS        S    +  S  
Subjt:  LKIQFPGMFKLSLAKDATVQNLWN---DVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTLQVFQARSTVLDDSLSPQ

Query:  IWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC
        +W  +VP +VK F+W VAHK +NT D +Q R P  ++SP+IC+LC +  E+A HL LHC
Subjt:  IWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC

VVA30963.1 Hypothetical predicted protein, partial [Prunus dulcis]3.6e-6334.27Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ + G  R ++FW+PV D +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++P GV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        E+  R FLW+G +  K+ HLVRW++V KSK       G    RN     KW                                    C +PW++I+K  +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL
         F    ++ +G   K +FW+D WL E  LK  FP +  LS  K+ ++    N+    + WD   RR L + E+ E +IL  +L N RL  S  D   W++
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        +  G FS KS      + +  +    S  IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+LC  + E   HL +HC ++
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]1.6e-6337.08Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K +++GIN+D G +N +A   GC+V   P  YLG+ +GG  R I FWDPVV+ + N+L  W    +SKGGR T+I+AVLCSIP Y+M +FRIPIGV+  I
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSKF------GKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        EK  R FLW+G DG KR+H V W+ V K+KF      G    R+ +   KW                                    C SPW+DI+   +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSKF------GKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSD-DVCWWKL
        +F     + +G   + +FW+D W     LK  FP +F LS  ++  + +  +     ++WD   RR L + E+ E   L  LL   RL  S  D   WKL
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSD-DVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        D SG F+  S     Q            QIW+ K P +VK F+W      +NT D +Q+R P L ISP+ C LC+++ ++  HLLLHC F+
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

TrEMBL top hitse value%identityAlignment
M5VS59 Reverse transcriptase domain-containing protein (Fragment)9.3e-6534.78Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ +GG  R ++FW+PV+D +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++PIGV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        E+  R FLW+G +  K  HLVRW++V KSK       G    RN     KW                                    C +PW++I+K  +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL
         F    ++ +G   K +FW+D WL E  LK  FP +  LS  K+ ++    N+    + WD   RR L + E+ E +IL  +L N RL  S  D   W++
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        +  G FS KS      + +  +    S  IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+LC  + E   HL +HC ++
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)9.3e-6535.36Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ +GG  R ++FW+PV++ +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++PIGV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK----FGKQFIRNHLDF--KKW----------------------KCCSSPWKDIAKLASVFKVNRKYKIGR
        E+  R FLW+G D  K+ HLVRW++V KSK     G   +R  ++    KW                          +PW++I+K  + F    ++ +G 
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK----FGKQFIRNHLDF--KKW----------------------KCCSSPWKDIAKLASVFKVNRKYKIGR

Query:  ENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTL
          K +FW+D WL E  LK  FP +  LS  K+ ++    N+    + WD   RR L + E+ E +IL  +L N RL  S  D   W+++  G FS KS  
Subjt:  ENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKLDGSGKFSVKSTL

Query:  QVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
            + +  +    S  IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+LC  + E   HL +HC ++
Subjt:  QVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

M5WJI4 zf-RVT domain-containing protein2.4e-6537.08Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K +++GIN+D G LN +A   GC+V   P  YLG+ +GG  R I FWDPVV+ + N+L  W    +SKGGR T+I+AVLCSIP Y+M +FRIPIGV+  I
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSKF------GKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        EK  R FLW+G DG KR+H V W+ V K+KF      G    R+     KW                                    C SPW+DI+   +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSKF------GKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWN----DVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSD-DVCWWKL
        +F     +++G   + +FW+D W     LK  FP +F LS  ++  + +        ++WD   RR L + E+ E+  L  LL   R+ +S  D   WKL
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWN----DVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSD-DVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        D  G F+  S     Q R      S   QIW+ K P +VK F+W      +NT D +Q+R P L ISP+ C LC+++ E+  H+L+HC F+
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

M5WKV4 Reverse transcriptase domain-containing protein (Fragment)1.6e-6434.78Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ +GG  R ++FW+PV+D +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++PIGV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        E+  R FLW+G +  K  HLVRW++V KSK       G    RN     KW                                    C +PW++I+K  +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL
         F    ++ +G   K +FW+D WL E  LK  FP +  LS  K+ ++    N+    + WD   RR L + E+ E +IL  +L N RL  S  D   W++
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
           G FS KS      + +  +    S  IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+LC  + E   HL +HC ++
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)1.2e-6434.78Show/hide
Query:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI
        K+ I+GIN     LN++A   GC+V   P  YLG+ +GG  R ++FW+PV++ +  +L  W    +SKGGR TLI+AVL SIP+Y+M +F++PIGV+ ++
Subjt:  KTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEI

Query:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS
        E+  R FLW+G +  K+ HLVRW++V KSK       G    RN     KW                                    C +PW++I+K  +
Subjt:  EKAFRRFLWKGGDGDKRSHLVRWDKVIKSK------FGKQFIRNHLDFKKW----------------------------------KCCSSPWKDIAKLAS

Query:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL
         F    ++ +G   K +FW+D WL E  LK  FP +  LS  K+ ++    N+    + WD   RR L + E+ E +IL  +L N RL  S  D   W++
Subjt:  VFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWND----VAWDLKLRRGLFDREMNESMILFSLLNNCRLNNS-DDVCWWKL

Query:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA
        +  G FS KS      + +  +    S  IW+ K P +++FF+W  A+  INT D +Q+R P + +SP+ C+LC  + E   HL LHC ++
Subjt:  DGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHCDFA

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.4e-2023.32Show/hide
Query:  DFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEIEKAFRRFLWKGGDGDKRSHLVRWDKV------------------
        D +  +++ + ++++ W    +S  GR TL KAVL S+P + M    +P  +   +++  R FLW      K+ HLV+W KV                  
Subjt:  DFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEIEKAFRRFLWKGGDGDKRSHLVRWDKV------------------

Query:  --IKSKFG----------------KQFIRNHLDFKKW----KCCSSPWKDIA-KLASVFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAK
          + SK G                K++    +   +W       SS W+ IA  L  V      +  G   + +FW D W+   PL ++     + +   
Subjt:  --IKSKFG----------------KQFIRNHLDFKKW----KCCSSPWKDIA-KLASVFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAK

Query:  DATVQNLW-NDVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSDDVCWWKLDGSGKFSVKSTLQVFQARSTVLDD--SLSPQIWEGKVPNRVKFFLWT
            ++LW     WD      +     N + +    +    +  + D   WK    G+FSV+S  ++         +  S    +W+ +VP RVK FLW 
Subjt:  DATVQNLW-NDVAWDLKLRRGLFDREMNESMILFSLLNNCRLNNSDDVCWWKLDGSGKFSVKSTLQVFQARSTVLDD--SLSPQIWEGKVPNRVKFFLWT

Query:  VAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC
        V ++++ T ++  +R+ S S   N+C +C    E+  H+L  C
Subjt:  VAHKSINTMDKVQKRYPSLSISPNICMLCHRSEETASHLLLHC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAAAACTGCTATAATTGGCATTAATGTGGACGCTGGGGAACTGAATAGCATTGCTCAAATGATGGGCTGCAAGGTGGAAAATTTACCTTTTCCCTATCTGGGAGT
TACAGTGGGGGGCAAGGCAAGGACAATTGACTTTTGGGATCCAGTGGTAGATAACATTAGAAATAAATTGGCCACTTGGAATGGATTTCCTATCTCAAAGGGTGGTAGAA
CAACCCTTATCAAAGCGGTTTTATGTAGCATTCCAGCATACTTTATGCCTATCTTCAGAATCCCTATTGGGGTGAGTAAGGAAATTGAAAAGGCTTTTAGAAGATTCCTA
TGGAAGGGTGGAGACGGTGACAAGCGATCTCACCTAGTAAGATGGGATAAGGTGATAAAGAGTAAGTTTGGGAAGCAATTCATTAGAAATCACTTAGATTTCAAGAAATG
GAAGTGTTGTAGCAGCCCTTGGAAGGATATTGCGAAGCTGGCCAGCGTTTTTAAGGTGAACAGAAAGTATAAAATTGGCCGGGAAAATAAGGCTCAGTTTTGGGATGATT
GCTGGCTCATTGAAAACCCTCTCAAAATCCAATTTCCTGGAATGTTCAAACTCTCGTTGGCAAAAGATGCTACTGTTCAAAACTTATGGAATGATGTTGCGTGGGATTTG
AAGTTGAGAAGGGGGCTTTTTGACAGAGAAATGAATGAATCGATGATTCTGTTCTCGCTCCTAAACAATTGCAGATTAAACAACAGTGATGATGTTTGTTGGTGGAAGCT
AGATGGGTCGGGGAAGTTCTCAGTCAAATCTACATTACAGGTCTTTCAAGCTAGGAGCACAGTGTTGGACGACAGCTTATCACCCCAAATTTGGGAAGGAAAAGTCCCAA
ACAGGGTGAAATTTTTCTTGTGGACGGTGGCTCATAAAAGCATCAACACGATGGACAAGGTGCAAAAGAGATATCCCAGTCTCTCTATCTCCCCAAATATATGTATGCTA
TGCCATAGAAGTGAGGAGACAGCATCCCACTTATTGCTTCATTGTGATTTTGCAAAGGATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAAAACTGCTATAATTGGCATTAATGTGGACGCTGGGGAACTGAATAGCATTGCTCAAATGATGGGCTGCAAGGTGGAAAATTTACCTTTTCCCTATCTGGGAGT
TACAGTGGGGGGCAAGGCAAGGACAATTGACTTTTGGGATCCAGTGGTAGATAACATTAGAAATAAATTGGCCACTTGGAATGGATTTCCTATCTCAAAGGGTGGTAGAA
CAACCCTTATCAAAGCGGTTTTATGTAGCATTCCAGCATACTTTATGCCTATCTTCAGAATCCCTATTGGGGTGAGTAAGGAAATTGAAAAGGCTTTTAGAAGATTCCTA
TGGAAGGGTGGAGACGGTGACAAGCGATCTCACCTAGTAAGATGGGATAAGGTGATAAAGAGTAAGTTTGGGAAGCAATTCATTAGAAATCACTTAGATTTCAAGAAATG
GAAGTGTTGTAGCAGCCCTTGGAAGGATATTGCGAAGCTGGCCAGCGTTTTTAAGGTGAACAGAAAGTATAAAATTGGCCGGGAAAATAAGGCTCAGTTTTGGGATGATT
GCTGGCTCATTGAAAACCCTCTCAAAATCCAATTTCCTGGAATGTTCAAACTCTCGTTGGCAAAAGATGCTACTGTTCAAAACTTATGGAATGATGTTGCGTGGGATTTG
AAGTTGAGAAGGGGGCTTTTTGACAGAGAAATGAATGAATCGATGATTCTGTTCTCGCTCCTAAACAATTGCAGATTAAACAACAGTGATGATGTTTGTTGGTGGAAGCT
AGATGGGTCGGGGAAGTTCTCAGTCAAATCTACATTACAGGTCTTTCAAGCTAGGAGCACAGTGTTGGACGACAGCTTATCACCCCAAATTTGGGAAGGAAAAGTCCCAA
ACAGGGTGAAATTTTTCTTGTGGACGGTGGCTCATAAAAGCATCAACACGATGGACAAGGTGCAAAAGAGATATCCCAGTCTCTCTATCTCCCCAAATATATGTATGCTA
TGCCATAGAAGTGAGGAGACAGCATCCCACTTATTGCTTCATTGTGATTTTGCAAAGGATGTGTGA
Protein sequenceShow/hide protein sequence
MHKTAIIGINVDAGELNSIAQMMGCKVENLPFPYLGVTVGGKARTIDFWDPVVDNIRNKLATWNGFPISKGGRTTLIKAVLCSIPAYFMPIFRIPIGVSKEIEKAFRRFL
WKGGDGDKRSHLVRWDKVIKSKFGKQFIRNHLDFKKWKCCSSPWKDIAKLASVFKVNRKYKIGRENKAQFWDDCWLIENPLKIQFPGMFKLSLAKDATVQNLWNDVAWDL
KLRRGLFDREMNESMILFSLLNNCRLNNSDDVCWWKLDGSGKFSVKSTLQVFQARSTVLDDSLSPQIWEGKVPNRVKFFLWTVAHKSINTMDKVQKRYPSLSISPNICML
CHRSEETASHLLLHCDFAKDV