; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001774 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001774
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:35241659..35246725
RNA-Seq ExpressionLag0001774
SyntenyLag0001774
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0845730.1 hypothetical protein [Gossypium armourianum]1.5e-0735.71Show/hide
Query:  VVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRV
        +++RD +G V++SA+V++++V S    + LA V  MRL  E+ LA  ++E DS+ +    Q    +D SE G  V + +     +  + F +T R+ N V
Subjt:  VVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRV

Query:  AHELARFALKEG
        AH LA+ +LKEG
Subjt:  AHELARFALKEG

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]4.7e-1430.05Show/hide
Query:  NLVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVK------------WLPSEEGWY------------------WVVVRDEVGRVMLSAAVIHDHVGSPDLA
        +L  W   Y+  F+ T+  +    + VS+S  +            W P+EEG +                   +++RD  G+V+ SA    +HV S D A
Subjt:  NLVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVK------------WLPSEEGWY------------------WVVVRDEVGRVMLSAAVIHDHVGSPDLA

Query:  EGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFALK
        E LA V+G+R+ +E  ++P +LETDS+R++ L        LS+ G ++   +  +   +Q+ +SFT+R  N +AH LAR AL+
Subjt:  EGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFALK

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]3.0e-1333.33Show/hide
Query:  LVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVE
        LV+WA  Y+  FR  +       R  + + V WLP ++  Y                  +++R++ G+VM SA    +++ S D+AE +  V+G++L  +
Subjt:  LVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVE

Query:  MSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL
        + + P ILETDS R+F L  +P+  DLSE G +V +A+      +   F+F +RE N+ AH LAR AL
Subjt:  MSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.9e-0727.68Show/hide
Query:  IFEQSANLVDWAVNYLTVFRGTSRIYCEEIRG--VSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAV
        +F+    LV+WA  Y   FR         I G   + + + W P +EG Y                  +++ ++ G+VM +A    +++ S D+AE +A 
Subjt:  IFEQSANLVDWAVNYLTVFRGTSRIYCEEIRG--VSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAV

Query:  VDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL
        V+G++L  E+ +                  PA+ DLSE G +V +A+      +   F+F +RE N+ AH LAR AL
Subjt:  VDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.3e-0832.56Show/hide
Query:  ANLVDWAVNYLTVFRGTSR------IYCEEIR------------GVSRSAVKWLPSEEGWYWVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRL
        ++LV W+ NYL V++   R      + C   R             V+  A     S      V++RD  G V L+A  +       D  EG AV +G+ L
Subjt:  ANLVDWAVNYLTVFRGTSR------IYCEEIR------------GVSRSAVKWLPSEEGWYWVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRL

Query:  VVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQ-LGFSFTRRERNRVAHELARFAL
         VE       +ETDS+R+F LL     +D SE GVL S  ++ + ++ + + FSFT R  N  AH LA+ AL
Subjt:  VVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQ-LGFSFTRRERNRVAHELARFAL

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105332.3e-1430.05Show/hide
Query:  NLVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVK------------WLPSEEGWY------------------WVVVRDEVGRVMLSAAVIHDHVGSPDLA
        +L  W   Y+  F+ T+  +    + VS+S  +            W P+EEG +                   +++RD  G+V+ SA    +HV S D A
Subjt:  NLVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVK------------WLPSEEGWY------------------WVVVRDEVGRVMLSAAVIHDHVGSPDLA

Query:  EGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFALK
        E LA V+G+R+ +E  ++P +LETDS+R++ L        LS+ G ++   +  +   +Q+ +SFT+R  N +AH LAR AL+
Subjt:  EGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFALK

A0A6J1CIF1 uncharacterized protein LOC1110112371.5e-1333.33Show/hide
Query:  LVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVE
        LV+WA  Y+  FR  +       R  + + V WLP ++  Y                  +++R++ G+VM SA    +++ S D+AE +  V+G++L  +
Subjt:  LVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVE

Query:  MSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL
        + + P ILETDS R+F L  +P+  DLSE G +V +A+      +   F+F +RE N+ AH LAR AL
Subjt:  MSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL

A0A6J1DAR4 uncharacterized protein LOC1110189549.2e-0827.68Show/hide
Query:  IFEQSANLVDWAVNYLTVFRGTSRIYCEEIRG--VSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAV
        +F+    LV+WA  Y   FR         I G   + + + W P +EG Y                  +++ ++ G+VM +A    +++ S D+AE +A 
Subjt:  IFEQSANLVDWAVNYLTVFRGTSRIYCEEIRG--VSRSAVKWLPSEEGWY-----------------WVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAV

Query:  VDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL
        V+G++L  E+ +                  PA+ DLSE G +V +A+      +   F+F +RE N+ AH LAR AL
Subjt:  VDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFAL

A0A6J1DBJ7 uncharacterized protein LOC1110189736.4e-0932.56Show/hide
Query:  ANLVDWAVNYLTVFRGTSR------IYCEEIR------------GVSRSAVKWLPSEEGWYWVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRL
        ++LV W+ NYL V++   R      + C   R             V+  A     S      V++RD  G V L+A  +       D  EG AV +G+ L
Subjt:  ANLVDWAVNYLTVFRGTSR------IYCEEIR------------GVSRSAVKWLPSEEGWYWVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRL

Query:  VVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQ-LGFSFTRRERNRVAHELARFAL
         VE       +ETDS+R+F LL     +D SE GVL S  ++ + ++ + + FSFT R  N  AH LA+ AL
Subjt:  VVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQ-LGFSFTRRERNRVAHELARFAL

A0A7J9KH16 RNase H domain-containing protein (Fragment)7.0e-0835.71Show/hide
Query:  VVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRV
        +++RD +G V++SA+V++++V S    + LA V  MRL  E+ LA  ++E DS+ +    Q    +D SE G  V + +     +  + F +T R+ N V
Subjt:  VVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQEPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRV

Query:  AHELARFALKEG
        AH LA+ +LKEG
Subjt:  AHELARFALKEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCAGAATCAATGGATTTTGAAGAGTCTGTTGAAGTGGACGTTCCATGGAAATGGCGTACTGTTGGCAGAGGTCAACGTCAGGAGAGGGGCGTTGCAGAAAGGCA
AAGAAAGGAAAGGGCGAGGACAAGACGCCGAAGAAAACAGGAGAGGCGGCGGTGGGAAGGAGTCGACGTCGTTTCACGGTGGAGGAGGCGGCGAAGGGGGAGTCGATGTC
GTTCGTTTCGTGCTAGAGGAGACGTGAAGGAGACGACACCTTTGTTTCGTGCTTTGAGAGAAAGAGCACCACCAGCTTCAAGAAGAGGCCAAGCGCTGGTGAAAGACTTC
ATTTTCGAGCAAAGCGCTAACCTTGTGGATTGGGCGGTGAACTATCTTACTGTGTTTCGTGGGACCTCTCGGATATATTGTGAGGAGATTAGGGGAGTGTCTCGGAGTGC
AGTAAAATGGCTCCCGTCGGAGGAGGGATGGTACTGGGTTGTTGTTCGGGATGAGGTTGGGCGAGTCATGCTGTCAGCCGCTGTTATCCATGATCATGTGGGCAGTCCAG
ATTTGGCAGAGGGTCTGGCGGTGGTGGACGGGATGAGGCTTGTGGTGGAAATGAGTTTAGCTCCGACAATTCTTGAGACTGACTCTATGCGGGTTTTTACGCTGCTACAG
GAGCCTGCGATGCTGGATCTGTCGGAGTTCGGTGTGCTGGTTTCTGAGGCTCGAATGGAGGTGCCTGCGTATATTCAGCTCGGGTTCAGCTTTACAAGAAGGGAAAGAAA
TCGTGTCGCCCATGAGTTAGCCCGCTTTGCTTTGAAGGAGGGGGCTGTGAATATTGGATGGAATCGGTTCCTACGTGTGCCTATCTCTGTAACTGTTTCTTCCTGTGTGC
TATTTTCAGGTTTTAAAGGGTGGGCACTTGCATGGTTAGTGGATCCCAGGTTGATGCTTGATGCATCTGAGCATCGGTCCCATAGGTTGTTTGCATGTGTAGGCTACTTT
GAGGTGAAAGGCTTAGCATATGTTGCTCTTGGCTTTGAGCATGATAAATGTCAACATGTAAATCTCGGCCATCCGGGAATCCTGAATGGCTGGCTTGGTGAGGAATGCTT
GAGGAGCTGGAACCTAGCTGAGTTGCAGATAAAGTCATATGGTTGTCCTTTTAGATTGGGGCACGCGTTTTCGTGTGGGGAAGAGTGCTGCACATTGGCTGGTGTTTTGG
CCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCAGAATCAATGGATTTTGAAGAGTCTGTTGAAGTGGACGTTCCATGGAAATGGCGTACTGTTGGCAGAGGTCAACGTCAGGAGAGGGGCGTTGCAGAAAGGCA
AAGAAAGGAAAGGGCGAGGACAAGACGCCGAAGAAAACAGGAGAGGCGGCGGTGGGAAGGAGTCGACGTCGTTTCACGGTGGAGGAGGCGGCGAAGGGGGAGTCGATGTC
GTTCGTTTCGTGCTAGAGGAGACGTGAAGGAGACGACACCTTTGTTTCGTGCTTTGAGAGAAAGAGCACCACCAGCTTCAAGAAGAGGCCAAGCGCTGGTGAAAGACTTC
ATTTTCGAGCAAAGCGCTAACCTTGTGGATTGGGCGGTGAACTATCTTACTGTGTTTCGTGGGACCTCTCGGATATATTGTGAGGAGATTAGGGGAGTGTCTCGGAGTGC
AGTAAAATGGCTCCCGTCGGAGGAGGGATGGTACTGGGTTGTTGTTCGGGATGAGGTTGGGCGAGTCATGCTGTCAGCCGCTGTTATCCATGATCATGTGGGCAGTCCAG
ATTTGGCAGAGGGTCTGGCGGTGGTGGACGGGATGAGGCTTGTGGTGGAAATGAGTTTAGCTCCGACAATTCTTGAGACTGACTCTATGCGGGTTTTTACGCTGCTACAG
GAGCCTGCGATGCTGGATCTGTCGGAGTTCGGTGTGCTGGTTTCTGAGGCTCGAATGGAGGTGCCTGCGTATATTCAGCTCGGGTTCAGCTTTACAAGAAGGGAAAGAAA
TCGTGTCGCCCATGAGTTAGCCCGCTTTGCTTTGAAGGAGGGGGCTGTGAATATTGGATGGAATCGGTTCCTACGTGTGCCTATCTCTGTAACTGTTTCTTCCTGTGTGC
TATTTTCAGGTTTTAAAGGGTGGGCACTTGCATGGTTAGTGGATCCCAGGTTGATGCTTGATGCATCTGAGCATCGGTCCCATAGGTTGTTTGCATGTGTAGGCTACTTT
GAGGTGAAAGGCTTAGCATATGTTGCTCTTGGCTTTGAGCATGATAAATGTCAACATGTAAATCTCGGCCATCCGGGAATCCTGAATGGCTGGCTTGGTGAGGAATGCTT
GAGGAGCTGGAACCTAGCTGAGTTGCAGATAAAGTCATATGGTTGTCCTTTTAGATTGGGGCACGCGTTTTCGTGTGGGGAAGAGTGCTGCACATTGGCTGGTGTTTTGG
CCTAA
Protein sequenceShow/hide protein sequence
MKSESMDFEESVEVDVPWKWRTVGRGQRQERGVAERQRKERARTRRRRKQERRRWEGVDVVSRWRRRRRGSRCRSFRARGDVKETTPLFRALRERAPPASRRGQALVKDF
IFEQSANLVDWAVNYLTVFRGTSRIYCEEIRGVSRSAVKWLPSEEGWYWVVVRDEVGRVMLSAAVIHDHVGSPDLAEGLAVVDGMRLVVEMSLAPTILETDSMRVFTLLQ
EPAMLDLSEFGVLVSEARMEVPAYIQLGFSFTRRERNRVAHELARFALKEGAVNIGWNRFLRVPISVTVSSCVLFSGFKGWALAWLVDPRLMLDASEHRSHRLFACVGYF
EVKGLAYVALGFEHDKCQHVNLGHPGILNGWLGEECLRSWNLAELQIKSYGCPFRLGHAFSCGEECCTLAGVLA