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Lag0001808 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001808
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionrRNA N-glycosidase
Genome locationchr4:35636948..35637516
RNA-Seq ExpressionLag0001808
SyntenyLag0001808
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0035821 - modification of morphology or physiology of other organism (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
GO:0090729 - toxin activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR017989 - Ribosome-inactivating protein type 1/2
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAG12408.1 karasurin-H precursor [Trichosanthes kirilowii var. japonica]9.4e-2572.83Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        KLVGF  V+ALY+GA  TEA+V+FSLLG+TSATYKQFI N+R  LTVG+P V NIPVL+ TAA  A +LLV LTNYN ESITVA+DVVNVYV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

P98184.1 RecName: Full=Ribosome-inactivating protein bryodin II; AltName: Full=BD2; AltName: Full=rRNA N-glycosidase; Flags: Precursor [Bryonia dioica]9.7e-2268.13Show/hide
Query:  VGFCFVVALYLGAHTTE-ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +GF  V+ALY+GAH TE  +++FSL+GAT ATYK FI N+RT LTVGTP VY+IPVLR+ AA  A + LV LTNYN ES+TVALDVVNVYV
Subjt:  VGFCFVVALYLGAHTTE-ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

XP_022158191.1 ribosome-inactivating protein bryodin II-like [Momordica charantia]4.0e-1564.38Show/hide
Query:  ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +NVSFSLLGAT  TY+QFI N+R  LT+ + IVYNIPVL +TA  +A ++LV LTNY  E+ITVA+DVVNVY+
Subjt:  ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

XP_022158192.1 ribosome-inactivating protein bryodin II-like [Momordica charantia]2.8e-2163.04Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        + + F FV+AL  GA   EA+VSFS+LGATS TY+QFI N+R+TLT+ +P+VY IPVL+STA  +A ++LV LTNYN ESITVA+DVVN+YV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

XP_022158193.1 ribosome-inactivating protein bryodin II-like [Momordica charantia]4.4e-2266.3Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +L+ F F +ALYLGA   EA+VSFS+LG+TS TYKQFI N+R+ LTVG+ IVY+IPVL++TA  +A +LLV LTNYN ESI VA+DVVNVYV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

TrEMBL top hitse value%identityAlignment
A0A6J1DVE7 rRNA N-glycosidase2.1e-2266.3Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +L+ F F +ALYLGA   EA+VSFS+LG+TS TYKQFI N+R+ LTVG+ IVY+IPVL++TA  +A +LLV LTNYN ESI VA+DVVNVYV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

A0A6J1DWK4 rRNA N-glycosidase1.4e-2163.04Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        + + F FV+AL  GA   EA+VSFS+LGATS TY+QFI N+R+TLT+ +P+VY IPVL+STA  +A ++LV LTNYN ESITVA+DVVN+YV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

A0A6J1E093 rRNA N-glycosidase1.9e-1564.38Show/hide
Query:  ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +NVSFSLLGAT  TY+QFI N+R  LT+ + IVYNIPVL +TA  +A ++LV LTNY  E+ITVA+DVVNVY+
Subjt:  ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

A0A6J1IUB2 rRNA N-glycosidase2.3e-1355.95Show/hide
Query:  VALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        VA+     +  AN+SFSLLGAT+ TYKQFI+++R  LTV +  VY+IPVL +TA   A ++LV LTNY  ESITVA+D V+VY+
Subjt:  VALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

B1B626 rRNA N-glycosidase4.6e-2572.83Show/hide
Query:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        KLVGF  V+ALY+GA  TEA+V+FSLLG+TSATYKQFI N+R  LTVG+P V NIPVL+ TAA  A +LLV LTNYN ESITVA+DVVNVYV
Subjt:  KLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

SwissProt top hitse value%identityAlignment
P24478 Ribosome-inactivating protein karasurin-C1.2e-1147.25Show/hide
Query:  LVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        LV    ++ L+L A   E +VSF L GATS++Y  FI+N+R  L     + Y+IP+LRST   +  Y L+ LTNY  E+I+VA+DV NVYV
Subjt:  LVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

P33185 Ribosome-inactivating protein bryodin I7.3e-1244.68Show/hide
Query:  MKKLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +K LV +  ++ ++L + T E +VSF L GAT+ +Y  FI N+R  L      VYNIP+LRS+ + +  Y L+ LTNY  E+I+VA+DV NVY+
Subjt:  MKKLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

P98184 Ribosome-inactivating protein bryodin II1.3e-2468.13Show/hide
Query:  VGFCFVVALYLGAHTTE-ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        +GF  V+ALY+GAH TE  +++FSL+GAT ATYK FI N+RT LTVGTP VY+IPVLR+ AA  A + LV LTNYN ES+TVALDVVNVYV
Subjt:  VGFCFVVALYLGAHTTE-ANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

Q00465 Ribosome-inactivating protein luffin-alpha3.6e-1144.71Show/hide
Query:  VVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV
        ++A+++ A T EA+V FSL G++S +Y +FI ++R  L      VYNI +L S+A+ A+ Y L+ L+NY+ ++ITVA+DV NVY+
Subjt:  VVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYV

Q5F0I3 Ribosome-inactivating protein gynostemmin3.1e-1042.11Show/hide
Query:  KLVGFCFVVA--LYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLR-STAAWAACYLLVQLTNYNRESITVALDVVNVYV
        ++  FC VVA  LY G H  E +++FSL GA   TY  FI  +R  L++GT  V NI VL+   ++    +L + L NYN + IT+ +DV +VYV
Subjt:  KLVGFCFVVA--LYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLR-STAAWAACYLLVQLTNYNRESITVALDVVNVYV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGATGAAGAAATTGGTTGGGTTTTGCTTTGTTGTGGCTCTCTATCTTGGTGCTCATACCACAGAGGCTAATGTCAGCTTCTCTCTATTGGGTGCCACTAGTGC
AACCTACAAACAGTTCATAACCAATATGCGCACCACACTCACGGTTGGAACTCCAATTGTGTACAATATACCTGTGTTGAGGAGCACAGCAGCATGGGCAGCGTGCTACC
TCTTAGTGCAGCTCACAAATTATAATCGTGAATCTATTACAGTGGCACTGGATGTAGTGAACGTGTATGTTGGAGTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGATGAAGAAATTGGTTGGGTTTTGCTTTGTTGTGGCTCTCTATCTTGGTGCTCATACCACAGAGGCTAATGTCAGCTTCTCTCTATTGGGTGCCACTAGTGC
AACCTACAAACAGTTCATAACCAATATGCGCACCACACTCACGGTTGGAACTCCAATTGTGTACAATATACCTGTGTTGAGGAGCACAGCAGCATGGGCAGCGTGCTACC
TCTTAGTGCAGCTCACAAATTATAATCGTGAATCTATTACAGTGGCACTGGATGTAGTGAACGTGTATGTTGGAGTTTTTTGA
Protein sequenceShow/hide protein sequence
MEKMKKLVGFCFVVALYLGAHTTEANVSFSLLGATSATYKQFITNMRTTLTVGTPIVYNIPVLRSTAAWAACYLLVQLTNYNRESITVALDVVNVYVGVF