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Lag0001877 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001877
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosomal L18p/L5e family protein
Genome locationchr4:36462671..36463051
RNA-Seq ExpressionLag0001877
SyntenyLag0001877
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]6.2e-5895.24Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]6.9e-5795.16Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884096.1 uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]6.9e-5795.16Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]6.9e-5795.16Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
XP_038884099.1 uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]6.9e-5795.16Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS SQNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEE SRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTG
        VLPLFDSV+RSGVAVDGAEKLGTG
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTG
TrEMBL top hitse value%identityAlignment
A0A0A0KE39 Uncharacterized protein3.0e-5895.24Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSGVAVDGAEKLGTG+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A1S4DVU4 uncharacterized protein LOC1034886724.8e-5692.06Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSG+AVDG EKLG G+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A5D3BWW4 Uncharacterized protein4.8e-5692.06Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVG KLG RLKEIGVSDVRIDLAEELSRP+YYRKM
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSV+RSG+AVDG EKLG G+I
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A6J1EVG7 uncharacterized protein LOC1114363401.3e-5390.48Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPV YR  
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSVRRSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
A0A6J1JZ79 uncharacterized protein LOC1114887454.1e-5591.27Show/hide
Query:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM
        MS +QNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWDSK+ASRVGEKLG RLKEIGVSDVRIDLAEELSRPVYYR  
Subjt:  MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKM

Query:  VLPLFDSVRRSGVAVDGAEKLGTGAI
        VLPLFDSVRRSGVAV+GAEKLG+GAI
Subjt:  VLPLFDSVRRSGVAVDGAEKLGTGAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43310.1 Ribosomal L18p/L5e family protein6.0e-4371.43Show/hide
Query:  TSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVL
        T ++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK ASRVGEKLGLRL+E+GV  V ID  EE+SRP+++RK VL
Subjt:  TSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVL

Query:  PLFDSVRRSGVAVDGAEKL
        PLFDSVRR+G+ VDG E+L
Subjt:  PLFDSVRRSGVAVDGAEKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACAAGCCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACTGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTC
CGAGCAGGAATTCGTTGCCTATTACCGCTCTAAGCTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCC
GTTTGAAGGAGATCGGCGTTTCCGATGTTCGGATCGATCTCGCCGAAGAGCTTTCCCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGACTCCGTTCGGCGC
TCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTCGGAACAGGTGCGATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACAAGCCAGAACCACCTCCTCCGCCTCGTTCTTTCCTGCCGGAAAATCACTGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTC
CGAGCAGGAATTCGTTGCCTATTACCGCTCTAAGCTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTCGGCCTCC
GTTTGAAGGAGATCGGCGTTTCCGATGTTCGGATCGATCTCGCCGAAGAGCTTTCCCGCCCTGTCTACTATCGGAAGATGGTTCTGCCGCTCTTCGACTCCGTTCGGCGC
TCCGGCGTCGCCGTCGACGGCGCTGAGAAGCTCGGAACAGGTGCGATCTAG
Protein sequenceShow/hide protein sequence
MSTSQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGLRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVRR
SGVAVDGAEKLGTGAI