; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0001903 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001903
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description60S ribosomal protein L38
Genome locationchr4:36782780..36785776
RNA-Seq ExpressionLag0001903
SyntenyLag0001903
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455431.1 PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]7.2e-2967.89Show/hide
Query:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD
        PS+     NFRSTFLGEKNGF VSAMPVCHIG  LLRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELSIL PR  +I           R+D
Subjt:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRS
        +  +++K++
Subjt:  ARSVKIKRS

XP_022136314.1 50S ribosomal protein L6, chloroplastic [Momordica charantia]4.1e-3268.1Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST ++PFQT NFRSTFLGEKNGFSVS MPVCHIG  LLRKTIEC E RIGKQPIQVPSNV I LQGQDLKVKGPLGELSIL PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RRKDARSVKIKRSKDV
        +    ++V+ +R+K +
Subjt:  RRKDARSVKIKRSKDV

XP_022930652.1 50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata]8.5e-3072.55Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST S+PFQT NFRSTFLGEKNGFS S MPV HI    LRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+L PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RR
        ++
Subjt:  RR

XP_022988916.1 50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima]8.5e-3072.55Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST S+PFQT NFRSTFLGEKNGFS S MPV HI    LRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+L PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RR
        ++
Subjt:  RR

XP_023530191.1 50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo]9.3e-2966.37Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST S+PFQT NFRSTFLGEKNGFS S +PV HI    LR+TIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+L PR  +I          
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RRKDARSVKIKRS
         R DA  +++K++
Subjt:  RRKDARSVKIKRS

TrEMBL top hitse value%identityAlignment
A0A0A0K3K9 Uncharacterized protein1.9e-2765.14Show/hide
Query:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD
        P+      NFRSTFLGEKNGF VSAMP CHIG  LLRKTIEC E RIGKQPIQVPS+VTITLQGQDLKVKGPLGELSIL PR  +I           R+D
Subjt:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRS
        +  +++K++
Subjt:  ARSVKIKRS

A0A1S3C0W5 50S ribosomal protein L6, chloroplastic3.5e-2967.89Show/hide
Query:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD
        PS+     NFRSTFLGEKNGF VSAMPVCHIG  LLRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELSIL PR  +I           R+D
Subjt:  PSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKD

Query:  ARSVKIKRS
        +  +++K++
Subjt:  ARSVKIKRS

A0A6J1C3Z5 50S ribosomal protein L6, chloroplastic2.0e-3268.1Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST ++PFQT NFRSTFLGEKNGFSVS MPVCHIG  LLRKTIEC E RIGKQPIQVPSNV I LQGQDLKVKGPLGELSIL PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RRKDARSVKIKRSKDV
        +    ++V+ +R+K +
Subjt:  RRKDARSVKIKRSKDV

A0A6J1ER61 50S ribosomal protein L6, chloroplastic isoform X24.1e-3072.55Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST S+PFQT NFRSTFLGEKNGFS S MPV HI    LRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+L PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RR
        ++
Subjt:  RR

A0A6J1JIK5 50S ribosomal protein L6, chloroplastic isoform X24.1e-3072.55Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAST S+PFQT NFRSTFLGEKNGFS S MPV HI    LRKTIEC E RIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+L PR  +I      +L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RR
        ++
Subjt:  RR

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L387.0e-2795.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P46291 60S ribosomal protein L388.5e-2590.32Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P63173 60S ribosomal protein L389.7e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q32PB9 60S ribosomal protein L389.7e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q95V84 60S ribosomal protein L386.1e-2385.48Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family1.0e-2051.96Show/hide
Query:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA
        MAS+    FQ    RS FLG++N F VS+ P   +G+    KTIEC E RIGKQPI VPSNVTI L+GQDLKVKGPLGEL++  PR  ++ + +   L  
Subjt:  MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTA

Query:  RR
        ++
Subjt:  RR

AT2G43460.1 Ribosomal L38e protein family4.9e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

AT3G59540.1 Ribosomal L38e protein family4.9e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACGCCATCCGTCCCTTTTCAAACCAGAAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCCGTTTCTGCAATGCCTGTATGTCATATTGGTTT
CCGTCTCTTGAGGAAGACTATAGAATGCAATGAATTACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTA
AGGGTCCTTTGGGAGAGCTTTCAATTCTTAATCCTCGACCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATT
AAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTGTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACC
AGGAACTTTAGATTTCTTGGAGGAGCTCAGAGGTTTGATATGGGGAGTTGTGGGAGTGGGAGATGTTATCCTTGTTCAAGTGTTAGTTGTTTCTTATCGATGTAAGACTA
TGTTGGCGTCGGAACGTCAAAACAAATATTCTATATTGTGCAGGTCCATCTTAAAAATTCTTTTGACCTCCTTTGGAATGGAAGAGGACCACATATTTTGTGCAATGGCT
CTGCTGCTTGCATCTGTCACTTTTGATTTCGAATCTCAGTTTCAATTTTATGGTTGTCATTCTAGGCCGAGTCCAACTCTATTGCCTGTAAACTGGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACGCCATCCGTCCCTTTTCAAACCAGAAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCCGTTTCTGCAATGCCTGTATGTCATATTGGTTT
CCGTCTCTTGAGGAAGACTATAGAATGCAATGAATTACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTA
AGGGTCCTTTGGGAGAGCTTTCAATTCTTAATCCTCGACCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATT
AAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTTTGTGTGTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACC
AGGAACTTTAGATTTCTTGGAGGAGCTCAGAGGTTTGATATGGGGAGTTGTGGGAGTGGGAGATGTTATCCTTGTTCAAGTGTTAGTTGTTTCTTATCGATGTAAGACTA
TGTTGGCGTCGGAACGTCAAAACAAATATTCTATATTGTGCAGGTCCATCTTAAAAATTCTTTTGACCTCCTTTGGAATGGAAGAGGACCACATATTTTGTGCAATGGCT
CTGCTGCTTGCATCTGTCACTTTTGATTTCGAATCTCAGTTTCAATTTTATGGTTGTCATTCTAGGCCGAGTCCAACTCTATTGCCTGTAAACTGGACATAG
Protein sequenceShow/hide protein sequence
MASTPSVPFQTRNFRSTFLGEKNGFSVSAMPVCHIGFRLLRKTIECNELRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILNPRPKQIHEIKDFLLTARRKDARSVKI
KRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGTLDFLEELRGLIWGVVGVGDVILVQVLVVSYRCKTMLASERQNKYSILCRSILKILLTSFGMEEDHIFCAMA
LLLASVTFDFESQFQFYGCHSRPSPTLLPVNWT