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Lag0001932 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001932
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr4:37218331..37218944
RNA-Seq ExpressionLag0001932
SyntenyLag0001932
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-0534.88Show/hide
Query:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWL
        ++  +I FW   W+ E  L+ +  RL+ LS  KD+ V +A +  +  W+   RR L DRER  W  I    PKP  + GS    W+
Subjt:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWL

KAA0055411.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.0e-0432.91Show/hide
Query:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKG
        +  + I FW D W  +SP+ +S  RLY LST K+  V++  +     W     R L + E  +W++I SS   P++++G
Subjt:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKG

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]8.0e-0531.03Show/hide
Query:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALT
        FW   W + SP   +  RL+ LST+K   +    + E   W  +PRR L   E ++W ++  S P P+   G D+ RW    + + T
Subjt:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALT

TrEMBL top hitse value%identityAlignment
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein9.5e-0430.61Show/hide
Query:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQ
        FW   W + SPL     RL+ LST KD  + +  +     W   PRR L + E  +W  + +S        G DS  W T   + L      KK  +Q
Subjt:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQ

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein5.6e-0430.61Show/hide
Query:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQ
        FW   W + SPL +   RL+ LST KD  + +  +     W   PRR L + E  +W  + +S        G DS  W T   + L      KK  +Q
Subjt:  FWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQ

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein1.3e-0534.88Show/hide
Query:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWL
        ++  +I FW   W+ E  L+ +  RL+ LS  KD+ V +A +  +  W+   RR L DRER  W  I    PKP  + GS    W+
Subjt:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWL

A0A5A7UPD1 LINE-1 retrotransposable element ORF2 protein1.9e-0432.91Show/hide
Query:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKG
        +  + I FW D W  +SP+ +S  RLY LST K+  V++  +     W     R L + E  +W++I SS   P++++G
Subjt:  SSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAAATCTTCCAGCTCCAGGATTAAATTCTGGACAGACATTTGGACAAAGGAATCGCCTCTAATGATTTCTCAAAACCGCCTATACCACCTTTCGACAAGAAA
AGACTTGCATGTTGATGAAGCTGGGTCGATTGAAAATCAGAGTTGGTCTTTCTTCCCTCGACGCTCCTTGCTTGATAGAGAAAGGATAATATGGAACAACATCAGCTCTA
GCTTCCCAAAGCCTGTCGCCTCCAAAGGTTCAGACTCAATTCGATGGTTAACCGCTAAAGATGACGCCTTAACACAGCAGACAGGCTTCAAAAAAGGCTCAAAACAACAA
TGCTCAGCTCAAGCATCTGTCATCTTTGCAAAAGAAGTTCTGAATCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAAAATCTTCCAGCTCCAGGATTAAATTCTGGACAGACATTTGGACAAAGGAATCGCCTCTAATGATTTCTCAAAACCGCCTATACCACCTTTCGACAAGAAA
AGACTTGCATGTTGATGAAGCTGGGTCGATTGAAAATCAGAGTTGGTCTTTCTTCCCTCGACGCTCCTTGCTTGATAGAGAAAGGATAATATGGAACAACATCAGCTCTA
GCTTCCCAAAGCCTGTCGCCTCCAAAGGTTCAGACTCAATTCGATGGTTAACCGCTAAAGATGACGCCTTAACACAGCAGACAGGCTTCAAAAAAGGCTCAAAACAACAA
TGCTCAGCTCAAGCATCTGTCATCTTTGCAAAAGAAGTTCTGAATCATTAG
Protein sequenceShow/hide protein sequence
MASKSSSSRIKFWTDIWTKESPLMISQNRLYHLSTRKDLHVDEAGSIENQSWSFFPRRSLLDRERIIWNNISSSFPKPVASKGSDSIRWLTAKDDALTQQTGFKKGSKQQ
CSAQASVIFAKEVLNH