CuGenDBv2

Gene ID	Lag0001933
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr4:37219610..37220239
RNA-Seq Expression	Lag0001933
Synteny	Lag0001933
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

1.3e-44

56.99

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANEA+D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

7.7e-45

56.99

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANEA+D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

4.5e-45

58.18

Show/hide

Query:  SMFFFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIII
        S+ FF+K ++N+N+N TYIALI+KK + S   D+RPISLTT+       +L+ RLK TL +TI+ NQ AFIK RQI + IL+ANEA+D WK  K KG I+
Subjt:  SMFFFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIII

Query:  KLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP
        KLD+EKAF+ ++WDFI+ +L  K YP  WRKWIRGCIS+V+YSII+NGK +G I   RG+RQGDP
Subjt:  KLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP

KAA0063661.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.4e-45

59.26

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F +K ++N+N+N T+IALI+KK N S   D+RPISLTT+       +L+ RLK TL +TI+ NQ AFIK RQI + IL+ANEA+D WK  K KG I+KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP
        +EKAF  +SWDFI+ +L  K YPP WRKWIRGCIS+V+YSII+NGK +G I   RG+RQGDP
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.2e-44

56.45

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANE +D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein

3.7e-45

56.99

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANEA+D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein

6.3e-45

56.99

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANEA+D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein

2.2e-45

58.18

Show/hide

Query:  SMFFFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIII
        S+ FF+K ++N+N+N TYIALI+KK + S   D+RPISLTT+       +L+ RLK TL +TI+ NQ AFIK RQI + IL+ANEA+D WK  K KG I+
Subjt:  SMFFFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIII

Query:  KLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP
        KLD+EKAF+ ++WDFI+ +L  K YP  WRKWIRGCIS+V+YSII+NGK +G I   RG+RQGDP
Subjt:  KLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP

A0A5A7VD46 LINE-1 retrotransposable element ORF2 protein

1.7e-45

59.26

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F +K ++N+N+N T+IALI+KK N S   D+RPISLTT+       +L+ RLK TL +TI+ NQ AFIK RQI + IL+ANEA+D WK  K KG I+KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP
        +EKAF  +SWDFI+ +L  K YPP WRKWIRGCIS+V+YSII+NGK +G I   RG+RQGDP
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein

1.1e-44

56.45

Show/hide

Query:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
        F K  IVN NVN T+IALISKK   SK SDYRPISLTT+       +L  RLK  L +TIAENQ AFIK RQI + ILIANE +D WK  K KG ++KLD
Subjt:  FFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTT-------SLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD

Query:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG
        +EKAF KISW FI+ +L  K +P  WRKWI+ CIS+V YSI+LNG  +G I  +RGIRQGDP SP +  L++ +++ + S ++ KG
Subjt:  VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SP-LSSLSLPWITLVDSLMKLKG

SwissProt top hits

e value

%identity

Alignment

O00370 LINE-1 retrotransposable element ORF2 protein

7.8e-08

33.72

Show/hide

Query:  KKSIVNRNVNETYIALISKK-VNSSKVSDYRPISLTTTS-------LTERLKPTLIETIAENQSAFI-------KERQIINVILIANEAVDMWKCAKKKG
        K+ I+  +  E  I LI K   +++K  ++RPISL           L  R++  + + I  +Q  FI         R+ INVI   N A D      K  
Subjt:  KKSIVNRNVNETYIALISKK-VNSSKVSDYRPISLTTTS-------LTERLKPTLIETIAENQSAFI-------KERQIINVILIANEAVDMWKCAKKKG

Query:  IIIKLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SPL
        +II +D EKAF KI   F+   L   G   M+ K IR      + +IILNG+      +K G RQG P SPL
Subjt:  IIIKLDVEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDP-SPL

Arabidopsis top hits

e value

%identity

Alignment

AT4G20520.1 RNA binding;RNA-directed DNA polymerases

2.8e-08

36.14

Show/hide

Query:  LTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGI----IIKLDVEKAFHKISWDFINTILFYKGYPPMW
        + ERLKP +   I   Q++FI  R   + I+   EAV   +  +KKG+    ++KLD+EKA+ +I WD++   L   G+P +W
Subjt:  LTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGI----IIKLDVEKAFHKISWDFINTILFYKGYPPMW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAACACTCTACACTCTCAAGCCATCCATCATGTCTGTGTTCCATGTTTTTTTTCAAAAAGAGTATCGTGAACCGAAACGTCAATGAGACATACATTGCCCTCATTTC
AAAGAAGGTCAATTCTTCGAAGGTGTCTGACTATAGACCAATCAGCTTAACCACGACTAGTCTCACAGAAAGGCTTAAACCAACCCTCATTGAAACAATTGCTGAAAATC
AGTCAGCCTTTATTAAAGAGAGGCAAATCATAAACGTCATCTTAATAGCAAATGAGGCAGTAGATATGTGGAAATGCGCCAAGAAAAAGGGGATCATCATAAAGCTAGAT
GTCGAAAAAGCTTTTCATAAGATCAGCTGGGATTTCATCAACACAATCCTGTTCTACAAAGGTTATCCTCCCATGTGGCGAAAATGGATAAGAGGTTGTATCTCCTCAGT
TAGCTACTCCATCATCTTAAACGGCAAACTAAGAGGAAACATTTTAGTTAAAAGGGGCATTAGACAAGGTGATCCCTCTCCCCTTTCATCTTTGTCCTTGCCATGGATTA
CCTTAGTAGACTCATTAATGAAGCTGAAGGGAAAGGCCTCCTTGCTGGTGTTTCTATGGGTTCGGGAGAGCCCTCAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MEHSTLSSHPSCLCSMFFFKKSIVNRNVNETYIALISKKVNSSKVSDYRPISLTTTSLTERLKPTLIETIAENQSAFIKERQIINVILIANEAVDMWKCAKKKGIIIKLD
VEKAFHKISWDFINTILFYKGYPPMWRKWIRGCISSVSYSIILNGKLRGNILVKRGIRQGDPSPLSSLSLPWITLVDSLMKLKGKASLLVFLWVRESPQ

Lag0001933 (gene) of Sponge gourd (AG-4) v1 genome