CuGenDBv2

Gene ID	Lag0001938
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	trigger factor-like isoform X3
Genome location	chr4:37324136..37332383
RNA-Seq Expression	Lag0001938
Synteny	Lag0001938
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0015031 - protein transport (biological process) GO:0043335 - protein unfolding (biological process) GO:0051083 - 'de novo' cotranslational protein folding (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR005215 - Trigger factor IPR008881 - Trigger factor, ribosome-binding, bacterial IPR036611 - Trigger factor ribosome-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022155449.1 uncharacterized protein LOC111022592 isoform X2 [Momordica charantia]

7.1e-86

85.78

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL    R+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
         +T+
Subjt:  KETS

XP_022155452.1 uncharacterized protein LOC111022592 isoform X4 [Momordica charantia]

1.3e-84

85.78

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL   R+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRA
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA

Query:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL
Subjt:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
         +T+
Subjt:  KETS

XP_038876223.1 trigger factor isoform X1 [Benincasa hispida]

1.2e-85

85.37

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F   T  KVIYHKQTAD FTP + C +VSFPSQM Y SRKFSL    RYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQ
        AIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI++VINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQ
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQ

Query:  LKETS
        LKE++
Subjt:  LKETS

XP_038876224.1 trigger factor isoform X2 [Benincasa hispida]

4.9e-87

85.78

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F   T  KVIYHKQTAD FTP + C +VSFPSQM Y SRKFSL    RYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        AIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI++VINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
        KE++
Subjt:  KETS

XP_038876225.1 trigger factor isoform X3 [Benincasa hispida]

1.0e-84

86.8

Show/hide

Query:  FTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFD
        +  VIYHKQTAD FTP + C +VSFPSQM Y SRKFSL    RYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTRAIFNNVFD
Subjt:  FTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFD

Query:  EMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS
        +MVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI++VINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKE++
Subjt:  EMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBW0 Trigger_N domain-containing protein

3.5e-83

82.35

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F      K IYHKQT D FTP+L C  VSFPSQ+RY SRK SL    RYLPAACAVLSE+VSVSSSQF+DFSVT+ TN  EN+ELKIRVEVSGAKTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        AIFN VFD MVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIK+VINSTVAAYVEKEALKVGKDLRI+QSYEDLEDQFEPDE FFFDAIIQL
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
        KE++
Subjt:  KETS

A0A6J1DMZ5 uncharacterized protein LOC111022592 isoform X1

8.4e-85

85.37

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL    R+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQ
        AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQ
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQ

Query:  LKETS
        L +T+
Subjt:  LKETS

A0A6J1DN00 uncharacterized protein LOC111022592 isoform X5

6.0e-83

85.29

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL   R+LPAACAVLS DVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRA
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA

Query:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL
Subjt:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
         +T+
Subjt:  KETS

A0A6J1DPD9 uncharacterized protein LOC111022592 isoform X4

6.5e-85

85.78

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL   R+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRA
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL---RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRA

Query:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL
Subjt:  IFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEK-EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
         +T+
Subjt:  KETS

A0A6J1DQB1 uncharacterized protein LOC111022592 isoform X2

3.4e-86

85.78

Show/hide

Query:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR
        A+ F      KVIYHKQTADCFTPSL C SVSFPSQ+ YSSRK SL    R+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTR
Subjt:  ASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSL----RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTR

Query:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL
        AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPS+VYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL
Subjt:  AIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQL

Query:  KETS
         +T+
Subjt:  KETS

SwissProt top hits

e value

%identity

Alignment

B1XL18 Trigger factor

3.7e-05

23.08

Show/hide

Query:  ELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQF
        ++ + +EV    T+  +++   ++ A    +PGFR+ K      +P+ IL++ LGP+++   V++ +I+ ++ A + +E ++   + +++ S++DL   +
Subjt:  ELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQF

Query:  EPDEKFFFDAIIQLKET
        +P E   F A + +  T
Subjt:  EPDEKFFFDAIIQLKET

Arabidopsis top hits

e value

%identity

Alignment

AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

3.5e-43

58.44

Show/hide

Query:  RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI
        R   A CA  S+   V +S  D+  +        + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG SKVYKQVI
Subjt:  RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI

Query:  KKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS
        KK+INS +  YV++E LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E S
Subjt:  KKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

3.5e-43

58.44

Show/hide

Query:  RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI
        R   A CA  S+   V +S  D+  +        + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG SKVYKQVI
Subjt:  RYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVI

Query:  KKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS
        KK+INS +  YV++E LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E S
Subjt:  KKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTCTGCGACCGCAACCGCAACCGCAACGGTAACCAATATTGCCTCAGAATTCCGGCGGCCAACATTCACCAAAGTTATATATCACAAGCAGACAGCCGATTGCTT
TACTCCAAGCCTTGCCTGCAAAAGTGTGTCTTTTCCCAGTCAAATGAGATACAGTAGTAGAAAATTTTCTTTGAGGTATCTTCCAGCTGCTTGTGCTGTGTTATCAGAAG
ATGTGAGTGTTTCTTCTTCTCAGTTTGACGACTTCTCTGTCACTGATGCTACTAATATCAATGAGAATAGAGAACTAAAGATTCGTGTAGAGGTGTCTGGTGCCAAAACT
CGAGCAATTTTCAACAATGTCTTTGATGAAATGGTTGCTGAAGCCCAGCCTATTCCAGGCTTTCGGAGAGTGAAAGGAGGAAAGACACCAAACATACCCCGAGACATTCT
ATTAGAAATACTGGGACCTTCTAAGGTTTACAAGCAAGTTATCAAGAAAGTTATCAACTCCACTGTGGCTGCATATGTGGAAAAGGAAGCTCTAAAAGTGGGTAAAGACT
TGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAAGGAAACAAGCTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MASATATATATVTNIASEFRRPTFTKVIYHKQTADCFTPSLACKSVSFPSQMRYSSRKFSLRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKT
RAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETS

Lag0001938 (gene) of Sponge gourd (AG-4) v1 genome