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Lag0001960 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001960
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:37566964..37568551
RNA-Seq ExpressionLag0001960
SyntenyLag0001960
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2619807.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]5.1e-0437.66Show/hide
Query:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTL
        +++D A++E S+R G+G +I   +G  VA L K+F    SPL +E +A  E   L+ Q+ F    + SDSL +++TL
Subjt:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTL

MBA0751530.1 hypothetical protein [Gossypium gossypioides]2.3e-0429.92Show/hide
Query:  SGRTIQSLEKVYNLITDEEEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLL
        S R+ QSL+ V N I           AAFD  + +   G ++   EG++VA         +SP  AE VA L+  +L  Q  FN + +  DS ++I+   
Subjt:  SGRTIQSLEKVYNLITDEEEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLL

Query:  HHKQCQADCLNTITDIQQLRNNFQKIN
        +  + +++    I+DIQ L++ +++IN
Subjt:  HHKQCQADCLNTITDIQQLRNNFQKIN

XP_013589151.1 PREDICTED: uncharacterized protein LOC106297463 [Brassica oleracea var. oleracea]6.1e-0533.33Show/hide
Query:  EEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQ
        E +I  VD A+D  SR+CG+G I        +  +  S    SS L AE +AV   V L+   N   + V SDSLSLI  LL  + CQ +    + +I  
Subjt:  EEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQ

Query:  LRNNFQKINLSMLT
          ++F  I+ + ++
Subjt:  LRNNFQKINLSMLT

XP_040987666.1 uncharacterized protein LOC121235384 [Juglans microcarpa x Juglans regia]1.4e-0430.91Show/hide
Query:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRNNFQK
        DAA D+G+ R G+G ++   EG V+A L  S  LF +PL  E VA         +    ++ +  DSLS++  + H +   +D    I DI+ + + F  
Subjt:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRNNFQK

Query:  INLSMLTVEK
        ++ S+L V +
Subjt:  INLSMLTVEK

XP_040996136.1 uncharacterized protein LOC121242323 [Juglans microcarpa x Juglans regia]1.8e-0430.91Show/hide
Query:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRNNFQK
        DAA D+G+ R G+G ++   EG V+A L  S  LF  PL  E VA         +    ++ +  DSLS++  + H +   +D    I DI+ + + F  
Subjt:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRNNFQK

Query:  INLSMLTVEK
        ++ S+L V +
Subjt:  INLSMLTVEK

TrEMBL top hitse value%identityAlignment
A0A5B6UER1 Reverse transcriptase4.2e-0428.91Show/hide
Query:  SLEKVYNLITDE--EEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQ
        SL ++ N   +E   +  +  DAAFD  S++   G ++  R G +V  ++ S     +P  AE  A    VKL     F  V +  DS ++I+    +K 
Subjt:  SLEKVYNLITDE--EEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQ

Query:  CQADCLNTITDIQQLRNNFQKINLSMLT
         ++     I DIQ+L   F KI    +T
Subjt:  CQADCLNTITDIQQLRNNFQKINLSMLT

A0A5N5GXC2 Ribonuclease H protein2.5e-0437.66Show/hide
Query:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTL
        +++D A++E S+R G+G +I   +G  VA L K+F    SPL +E +A  E   L+ Q+ F    + SDSL +++TL
Subjt:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTL

A0A6J0M1V3 uncharacterized protein LOC1088377574.2e-0436.36Show/hide
Query:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPL-FSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRN
        ++ DAA++  S   G G II   + +V A  H +  L  SSPL AE +AV   +  +    FN +T+ SDS SLIS +++ K+ Q +  N I DI  L  
Subjt:  LHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPL-FSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQQLRN

Query:  NFQKINLSML
        +F  I  S +
Subjt:  NFQKINLSML

A0A6P9FAR1 uncharacterized protein LOC1183498772.5e-0432.61Show/hide
Query:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQ
        DAA D+G+ R G+G I+   EG V+A L  S  L   PL  E VA         +    ++ +  DSLS++  + H +   +D    I DI+
Subjt:  DAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLLHHKQCQADCLNTITDIQ

A0A7J9CSQ4 RNase H domain-containing protein1.1e-0429.92Show/hide
Query:  SGRTIQSLEKVYNLITDEEEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLL
        S R+ QSL+ V N I           AAFD  + +   G ++   EG++VA         +SP  AE VA L+  +L  Q  FN + +  DS ++I+   
Subjt:  SGRTIQSLEKVYNLITDEEEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSLSLISTLL

Query:  HHKQCQADCLNTITDIQQLRNNFQKIN
        +  + +++    I+DIQ L++ +++IN
Subjt:  HHKQCQADCLNTITDIQQLRNNFQKIN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAATTTTGGGACTACCTCTCTGAATTCCATAGATTTAGTCCGCGGAGTGGGCGTACAATTCAGTCTTTGGAGAAGGTATACAATTTGATCACAGATGAGGAGGA
GATGATTTTGCATGTAGATGCGGCTTTTGATGAAGGATCCCGACGTTGTGGCGTGGGGGCAATTATCATAACAAGGGAAGGAAAAGTGGTGGCTATTTTACATAAAAGTT
TCCCTCTGTTTTCTTCCCCTTTATGCGCTGAGGTCGTTGCGGTTCTGGAGGAAGTTAAATTGTCAGAACAACAAAATTTCAATTATGTGACGGTCTTCTCGGATTCTCTG
TCTCTGATATCTACTCTTCTTCATCATAAACAGTGTCAGGCAGATTGTCTTAACACAATCACGGATATCCAACAATTAAGGAACAATTTCCAAAAGATTAATCTTTCCAT
GTTAACCGTCGAGAAACTTGGCAGCTTCCGCCTAAGACTAAGACTGCGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAATTTTGGGACTACCTCTCTGAATTCCATAGATTTAGTCCGCGGAGTGGGCGTACAATTCAGTCTTTGGAGAAGGTATACAATTTGATCACAGATGAGGAGGA
GATGATTTTGCATGTAGATGCGGCTTTTGATGAAGGATCCCGACGTTGTGGCGTGGGGGCAATTATCATAACAAGGGAAGGAAAAGTGGTGGCTATTTTACATAAAAGTT
TCCCTCTGTTTTCTTCCCCTTTATGCGCTGAGGTCGTTGCGGTTCTGGAGGAAGTTAAATTGTCAGAACAACAAAATTTCAATTATGTGACGGTCTTCTCGGATTCTCTG
TCTCTGATATCTACTCTTCTTCATCATAAACAGTGTCAGGCAGATTGTCTTAACACAATCACGGATATCCAACAATTAAGGAACAATTTCCAAAAGATTAATCTTTCCAT
GTTAACCGTCGAGAAACTTGGCAGCTTCCGCCTAAGACTAAGACTGCGGTAG
Protein sequenceShow/hide protein sequence
MLQFWDYLSEFHRFSPRSGRTIQSLEKVYNLITDEEEMILHVDAAFDEGSRRCGVGAIIITREGKVVAILHKSFPLFSSPLCAEVVAVLEEVKLSEQQNFNYVTVFSDSL
SLISTLLHHKQCQADCLNTITDIQQLRNNFQKINLSMLTVEKLGSFRLRLRLR