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Lag0001980 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001980
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr4:37893471..37894283
RNA-Seq ExpressionLag0001980
SyntenyLag0001980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.5e-0430.71Show/hide
Query:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI
        ++LWR +I  KY   K  H  GDL  N S        R   + +     N GW++    ++SF  Y  W         YP L+ LS+ KE +I + WN  
Subjt:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI

Query:  DGSWNLHLRRNLLEAEITEWAYLSHNL
        +  W +  RR L + E++ W  +  NL
Subjt:  DGSWNLHLRRNLLEAEITEWAYLSHNL

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-0432Show/hide
Query:  LLRTDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWLFIPK--AQYPSLYHLSLKKEGTIAEF
        L   +ALWR +I  KY   K P   GD+  N S        R     +     N  W++    ++SF  Y  W    +    YP L+ LSL KE ++ + 
Subjt:  LLRTDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWLFIPK--AQYPSLYHLSLKKEGTIAEF

Query:  WNPIDGSWNLHLRRNLLEAEITEWA
        WN +D  WN   RR L + E ++WA
Subjt:  WNPIDGSWNLHLRRNLLEAEITEWA

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-0429.29Show/hide
Query:  LWRIVIASKYGVAKNPHKLGDL--TLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFG---GYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGS
        LW+ +I +KY         GD+    N S  R   +  C  L     ++ W++    SF    G+        + YP LY LS  KE +I + WN     
Subjt:  LWRIVIASKYGVAKNPHKLGDL--TLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFG---GYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGS

Query:  WNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDHGFGAL
        W+L+ RR L E E+  WA L +++     +N +D    AL
Subjt:  WNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDHGFGAL

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]2.2e-0431.06Show/hide
Query:  TDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFGGYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWN
        ++ALWR VI+S YGV  +PH  G L    SKG+G+         +      W     L+              +P LY +SLKKE  +A+ W+ +  +W+
Subjt:  TDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFGGYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWN

Query:  LHLRRNLLEAEITEWAYLSHNLTNFSIKNEED
        L  RR L + E+  W  +   L  F ++ E D
Subjt:  LHLRRNLLEAEITEWAYLSHNLTNFSIKNEED

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]1.3e-0440.28Show/hide
Query:  YMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEED
        Y +WL   I  A +P LY L+ + E ++A  WN    +W+L+LR NL E EI EW  LSH L +  + +  D
Subjt:  YMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEED

TrEMBL top hitse value%identityAlignment
A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein4.1e-0430.71Show/hide
Query:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI
        ++LWR +I  KY   K  H  GD+  N S        R   + +     N GW++    ++SF  Y  W         YP L+ LSL KE +I + WN  
Subjt:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI

Query:  DGSWNLHLRRNLLEAEITEWAYLSHNL
        +  W +  RR L + E++ W  +  NL
Subjt:  DGSWNLHLRRNLLEAEITEWAYLSHNL

A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein3.2e-0430.71Show/hide
Query:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI
        ++LWR +I  KY   K  H  GDL  N S        R   + +     N GW++    ++SF  Y  W         YP L+ LS+ KE +I + WN  
Subjt:  DALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWL--FIPKAQYPSLYHLSLKKEGTIAEFWNPI

Query:  DGSWNLHLRRNLLEAEITEWAYLSHNL
        +  W +  RR L + E++ W  +  NL
Subjt:  DGSWNLHLRRNLLEAEITEWAYLSHNL

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein1.8e-0432Show/hide
Query:  LLRTDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWLFIPK--AQYPSLYHLSLKKEGTIAEF
        L   +ALWR +I  KY   K P   GD+  N S        R     +     N  W++    ++SF  Y  W    +    YP L+ LSL KE ++ + 
Subjt:  LLRTDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIR--CSTLSMATLNLGWEM--APKLSFGGYMAWLFIPK--AQYPSLYHLSLKKEGTIAEF

Query:  WNPIDGSWNLHLRRNLLEAEITEWA
        WN +D  WN   RR L + E ++WA
Subjt:  WNPIDGSWNLHLRRNLLEAEITEWA

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein6.4e-0529.29Show/hide
Query:  LWRIVIASKYGVAKNPHKLGDL--TLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFG---GYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGS
        LW+ +I +KY         GD+    N S  R   +  C  L     ++ W++    SF    G+        + YP LY LS  KE +I + WN     
Subjt:  LWRIVIASKYGVAKNPHKLGDL--TLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFG---GYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGS

Query:  WNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDHGFGAL
        W+L+ RR L E E+  WA L +++     +N +D    AL
Subjt:  WNLHLRRNLLEAEITEWAYLSHNLTNFSIKNEEDHGFGAL

A0A6J1D884 uncharacterized protein LOC1110178191.1e-0431.06Show/hide
Query:  TDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFGGYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWN
        ++ALWR VI+S YGV  +PH  G L    SKG+G+         +      W     L+              +P LY +SLKKE  +A+ W+ +  +W+
Subjt:  TDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFGGYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWN

Query:  LHLRRNLLEAEITEWAYLSHNLTNFSIKNEED
        L  RR L + E+  W  +   L  F ++ E D
Subjt:  LHLRRNLLEAEITEWAYLSHNLTNFSIKNEED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGAGATTCTACTCCGAACGGATGCTCTATGGAGAATTGTCATTGCCTCCAAATACGGAGTGGCCAAAAATCCACACAAGTTGGGAGATCTCACTCTTAACAC
TTCCAAGGGCCGTGGAAATCCATACATAAGATGCAGCACTTTATCTATGGCTACATTGAATCTAGGGTGGGAAATGGCACCAAAACTCTCTTTTGGAGGATATATGGCTT
GGCTCTTCATCCCTAAGGCCCAGTATCCATCTTTATATCACTTATCTCTAAAAAAGGAGGGTACTATAGCAGAATTTTGGAACCCGATTGATGGATCTTGGAATCTTCAT
TTGAGGAGGAATCTTTTAGAAGCTGAGATTACAGAATGGGCTTATTTATCACACAATCTCACCAACTTCTCCATAAAAAATGAAGAAGATCATGGTTTTGGCGCCTTGGA
AATTCAGGTATTTTCTCCACAAGAACTCTCTTGCAGCAGATGGCCTCCTCATCTCAGAATAGCGGTACAGATCTTTATGGCCAGTTATGGAAGGGATCTATGCCGAAAAA
AGTCAAATTCTTCGTTTGGGAGATTAGTCATGCTTGTATCAATACAACAGATATTATTCAAAGAAGGAATCCTGGCTCTTTCCTCTCCCCTGGCTGCTGCATCATGTGCC
TTAAAGCTAATGAGACCCAAGCCCACCTTTTCAGTAGCTGTGAATACGCCTCTGCTTACTGGTCCTACCTTCAACAAGCTTTGGATGGCAATTTGCCCGGCCTGGCGATA
TCCACACCCTTATATCTTTTGCTATTCTTGGTCACCCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGGAGATTCTACTCCGAACGGATGCTCTATGGAGAATTGTCATTGCCTCCAAATACGGAGTGGCCAAAAATCCACACAAGTTGGGAGATCTCACTCTTAACAC
TTCCAAGGGCCGTGGAAATCCATACATAAGATGCAGCACTTTATCTATGGCTACATTGAATCTAGGGTGGGAAATGGCACCAAAACTCTCTTTTGGAGGATATATGGCTT
GGCTCTTCATCCCTAAGGCCCAGTATCCATCTTTATATCACTTATCTCTAAAAAAGGAGGGTACTATAGCAGAATTTTGGAACCCGATTGATGGATCTTGGAATCTTCAT
TTGAGGAGGAATCTTTTAGAAGCTGAGATTACAGAATGGGCTTATTTATCACACAATCTCACCAACTTCTCCATAAAAAATGAAGAAGATCATGGTTTTGGCGCCTTGGA
AATTCAGGTATTTTCTCCACAAGAACTCTCTTGCAGCAGATGGCCTCCTCATCTCAGAATAGCGGTACAGATCTTTATGGCCAGTTATGGAAGGGATCTATGCCGAAAAA
AGTCAAATTCTTCGTTTGGGAGATTAGTCATGCTTGTATCAATACAACAGATATTATTCAAAGAAGGAATCCTGGCTCTTTCCTCTCCCCTGGCTGCTGCATCATGTGCC
TTAAAGCTAATGAGACCCAAGCCCACCTTTTCAGTAGCTGTGAATACGCCTCTGCTTACTGGTCCTACCTTCAACAAGCTTTGGATGGCAATTTGCCCGGCCTGGCGATA
TCCACACCCTTATATCTTTTGCTATTCTTGGTCACCCCTTTAG
Protein sequenceShow/hide protein sequence
MDLEILLRTDALWRIVIASKYGVAKNPHKLGDLTLNTSKGRGNPYIRCSTLSMATLNLGWEMAPKLSFGGYMAWLFIPKAQYPSLYHLSLKKEGTIAEFWNPIDGSWNLH
LRRNLLEAEITEWAYLSHNLTNFSIKNEEDHGFGALEIQVFSPQELSCSRWPPHLRIAVQIFMASYGRDLCRKKSNSSFGRLVMLVSIQQILFKEGILALSSPLAAASCA
LKLMRPKPTFSVAVNTPLLTGPTFNKLWMAICPAWRYPHPYIFCYSWSPL