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Lag0001988 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0001988
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr4:37948602..37949150
RNA-Seq ExpressionLag0001988
SyntenyLag0001988
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR005135 - Endonuclease/exonuclease/phosphatase
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVX17353.1 hypothetical protein CK203_003781 [Vitis vinifera]6.5e-2742.95Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGL-----ISKDRRLFWIELADLRALCLPN
        M +ISWN RGLGS KKR ++K+ L S  P +V+ QETK    DR+ + S+W++RN  W+++ A GASG  + +     +S++    W+EL+D+  L  P 
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGL-----ISKDRRLFWIELADLRALCLPN

Query:  WILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        W +GGDFNV R + EK   +  T +MK F+ FI D EL D+PL +  F+
Subjt:  WILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

RVX23043.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.3e-2443.06Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG
        M +ISWN RGLGS KKR ++K+ L S  P +V+ QETK    DR+ + S+W++RN  W+++ A           S  R+ FW+EL+D+  L  P W +GG
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG

Query:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        DFNV R + EK   +  T +MK F+ FI D EL D+PL +  F+
Subjt:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.6e-2842.62Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFM-----------------------------
        M +++WNVRGLGS  KRA IK+ ++S  P +VIL ETK + I+ K IKSLWSS +IAW+S+DA GASG  +                             
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFM-----------------------------

Query:  ------GLIS----KDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
              G+ S    K R+LFW EL DL  LC P W+LG DFN+ RW+ E SS   P   M KFN FID   L D  ++NG+++
Subjt:  ------GLIS----KDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]7.7e-2844.44Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG
        M ++SWNVRG+  +KKR  +K  +   NP +V+LQETK+  IDR IIKSLWSS+++ W+ +++            ++R+  W EL D+       W LGG
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG

Query:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        DFNV+RW  +KSS    TR+M+KFN  I + +L ++PLSNGKF+
Subjt:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.8e-3042.54Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVG-----------------------------------
        M  ++WNVRGL SWKK ALIK  +S  NP +VILQETK++ +D  I+KSLWS+  I WS++DA G                                   
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVG-----------------------------------

Query:  ----ASGEFMGLISKDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGK
             SG +    ++   LFW EL DL  LC  +WIL GDFNVTRW+WEKS+    T++M  FN FI+D+ L D+PL+NG+
Subjt:  ----ASGEFMGLISKDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGK

TrEMBL top hitse value%identityAlignment
A0A438K826 Endo/exonuclease/phosphatase domain-containing protein3.1e-2742.95Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGL-----ISKDRRLFWIELADLRALCLPN
        M +ISWN RGLGS KKR ++K+ L S  P +V+ QETK    DR+ + S+W++RN  W+++ A GASG  + +     +S++    W+EL+D+  L  P 
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGL-----ISKDRRLFWIELADLRALCLPN

Query:  WILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        W +GGDFNV R + EK   +  T +MK F+ FI D EL D+PL +  F+
Subjt:  WILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

A0A438KPB4 LINE-1 retrotransposable element ORF2 protein1.1e-2443.06Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG
        M +ISWN RGLGS KKR ++K+ L S  P +V+ QETK    DR+ + S+W++RN  W+++ A           S  R+ FW+EL+D+  L  P W +GG
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG

Query:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        DFNV R + EK   +  T +MK F+ FI D EL D+PL +  F+
Subjt:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

A0A6J1CVN2 uncharacterized protein LOC1110146571.3e-2842.62Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFM-----------------------------
        M +++WNVRGLGS  KRA IK+ ++S  P +VIL ETK + I+ K IKSLWSS +IAW+S+DA GASG  +                             
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFM-----------------------------

Query:  ------GLIS----KDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
              G+ S    K R+LFW EL DL  LC P W+LG DFN+ RW+ E SS   P   M KFN FID   L D  ++NG+++
Subjt:  ------GLIS----KDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

A0A6J1DMQ9 uncharacterized protein LOC1110219833.7e-2844.44Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG
        M ++SWNVRG+  +KKR  +K  +   NP +V+LQETK+  IDR IIKSLWSS+++ W+ +++            ++R+  W EL D+       W LGG
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGG

Query:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS
        DFNV+RW  +KSS    TR+M+KFN  I + +L ++PLSNGKF+
Subjt:  DFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS

A0A6J1E2G6 uncharacterized protein LOC1110254051.4e-3042.54Show/hide
Query:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVG-----------------------------------
        M  ++WNVRGL SWKK ALIK  +S  NP +VILQETK++ +D  I+KSLWS+  I WS++DA G                                   
Subjt:  MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVG-----------------------------------

Query:  ----ASGEFMGLISKDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGK
             SG +    ++   LFW EL DL  LC  +WIL GDFNVTRW+WEKS+    T++M  FN FI+D+ L D+PL+NG+
Subjt:  ----ASGEFMGLISKDRRLFWIELADLRALCLPNWILGGDFNVTRWTWEKSSYTAPTRAMKKFNRFIDDNELQDIPLSNGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTAATCTCCTGGAACGTTCGAGGCTTGGGCTCCTGGAAAAAGAGAGCTCTCATTAAAAATCTTTTATCCTCTCACAACCCAGCTTTGGTGATCCTCCAAGAGAC
TAAGATGGCTGGTATTGATAGAAAGATTATCAAATCCCTATGGAGTTCGAGGAATATTGCTTGGTCCTCTATTGATGCTGTTGGTGCTTCTGGGGAGTTTATGGGCCTAA
TTTCCAAGGATAGGCGTTTATTCTGGATAGAACTAGCGGATCTCCGAGCTTTATGTCTCCCTAATTGGATATTGGGTGGTGATTTCAATGTGACCCGATGGACATGGGAG
AAATCATCATACACGGCCCCAACCCGAGCCATGAAGAAATTCAACAGATTTATTGATGACAATGAGCTACAAGACATTCCCTTATCCAACGGCAAATTCTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTTAATCTCCTGGAACGTTCGAGGCTTGGGCTCCTGGAAAAAGAGAGCTCTCATTAAAAATCTTTTATCCTCTCACAACCCAGCTTTGGTGATCCTCCAAGAGAC
TAAGATGGCTGGTATTGATAGAAAGATTATCAAATCCCTATGGAGTTCGAGGAATATTGCTTGGTCCTCTATTGATGCTGTTGGTGCTTCTGGGGAGTTTATGGGCCTAA
TTTCCAAGGATAGGCGTTTATTCTGGATAGAACTAGCGGATCTCCGAGCTTTATGTCTCCCTAATTGGATATTGGGTGGTGATTTCAATGTGACCCGATGGACATGGGAG
AAATCATCATACACGGCCCCAACCCGAGCCATGAAGAAATTCAACAGATTTATTGATGACAATGAGCTACAAGACATTCCCTTATCCAACGGCAAATTCTCATAG
Protein sequenceShow/hide protein sequence
MILISWNVRGLGSWKKRALIKNLLSSHNPALVILQETKMAGIDRKIIKSLWSSRNIAWSSIDAVGASGEFMGLISKDRRLFWIELADLRALCLPNWILGGDFNVTRWTWE
KSSYTAPTRAMKKFNRFIDDNELQDIPLSNGKFS