; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002038 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002038
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNopRA1 domain-containing protein
Genome locationchr4:38601032..38604573
RNA-Seq ExpressionLag0002038
SyntenyLag0002038
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156773.1 uncharacterized protein LOC111023605 isoform X1 [Momordica charantia]4.7e-4488.89Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF NHGADLAQ LSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQK+DE+HACQ LQVVISNILSKKPLD QVLLPQDIEIS VF+WER+L+RTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

XP_022959834.1 uncharacterized protein LOC111460777 [Cucurbita moschata]1.7e-4693.94Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQLLSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQ LQVVISNILSKKPLDPQ LLPQD EISRVFEWERNLVRTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

XP_023004323.1 uncharacterized protein LOC111497677 [Cucurbita maxima]7.3e-4590.91Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQLLSKIR PEEVNPAWRWTFYQPWKDY+LELTDLQKIDEVHACQ LQVVISNILSKK LDPQVLLPQD EIS+VFEWER+LVRTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

XP_023514480.1 uncharacterized protein LOC111778739 [Cucurbita pepo subsp. pepo]1.7e-4693.94Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQLLSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQ LQVVISNILSKKPLDPQ LLPQD EISRVFEWERNLVRTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

XP_038897459.1 uncharacterized protein LOC120085516 isoform X1 [Benincasa hispida]1.8e-4388.89Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQ LSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQK+DEVHACQ LQ+VISNILSKKP D QVLLPQDIEISRVFEWERNL+ TQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

TrEMBL top hitse value%identityAlignment
A0A0A0K4N8 Uncharacterized protein3.3e-4387.88Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF + GADLAQ LSKIR PEEVNPAWRWTFYQPWKDYSLELT+LQK+DEVHACQ LQ+VISNILSKKPLD QVLLPQDIEISRVFEWERNL+RTQ+SNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

A0A1S3C7M7 uncharacterized protein LOC103497624 isoform X11.3e-4286.87Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF + GADLAQ LSKIR PEEVNPAWRWTFYQPWKDYSLELT+LQK+DEVHACQ LQ+VISNILSKKPLD Q LLPQDIEISRVFEWERNL+RTQ+SNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

A0A6J1DRJ3 uncharacterized protein LOC111023605 isoform X12.3e-4488.89Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF NHGADLAQ LSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQK+DE+HACQ LQVVISNILSKKPLD QVLLPQDIEIS VF+WER+L+RTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

A0A6J1H985 uncharacterized protein LOC1114607778.4e-4793.94Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQLLSKIR PEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQ LQVVISNILSKKPLDPQ LLPQD EISRVFEWERNLVRTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

A0A6J1KZ52 uncharacterized protein LOC1114976773.5e-4590.91Show/hide
Query:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP
        LF +HGADLAQLLSKIR PEEVNPAWRWTFYQPWKDY+LELTDLQKIDEVHACQ LQVVISNILSKK LDPQVLLPQD EIS+VFEWER+LVRTQNSNP
Subjt:  LFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G72270.1 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714)3.3e-1139.76Show/hide
Query:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQ--VLLPQDIEISRVFEWER
        +  L S+I  P E  P WRW+++Q     S   TD ++IDE++ACQ L ++ S++L + P + Q  +LL +  ++S VFEWER
Subjt:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQVVISNILSKKPLDPQ--VLLPQDIEISRVFEWER

AT4G27010.1 CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714)2.1e-1850Show/hide
Query:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLE-LTDLQKIDEVHACQALQVVISNILSKKPLD-PQVLLPQDIEISRVFEWERNLVRT
        +  L SKI  P E  P WRW++YQ W+D S E  TDL KI+E+HACQ L ++ S +L + P +  QVLL +  ++S VFEWER+LV T
Subjt:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLE-LTDLQKIDEVHACQALQVVISNILSKKPLD-PQVLLPQDIEISRVFEWERNLVRT

AT4G27010.2 INVOLVED IN: biological_process unknown2.1e-1850Show/hide
Query:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLE-LTDLQKIDEVHACQALQVVISNILSKKPLD-PQVLLPQDIEISRVFEWERNLVRT
        +  L SKI  P E  P WRW++YQ W+D S E  TDL KI+E+HACQ L ++ S +L + P +  QVLL +  ++S VFEWER+LV T
Subjt:  LAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLE-LTDLQKIDEVHACQALQVVISNILSKKPLD-PQVLLPQDIEISRVFEWERNLVRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAACATGAAAGGACTCTTTATAATTCTCCATTGATCAAAGTCAACTCCATTGATCAGAACTATGCAGAGGAAGTGATTTCAGCCTTATTTTCTTTTTCAAATGT
TACGAGAGTTCCAGTTGCCTCTAGACTGGTTCATCCAGCTTTTTTCTGTCTCTTTCAGAATCATGGAGCTGATTTGGCACAACTGTTGTCAAAGATACGTTATCCTGAAG
AAGTAAATCCTGCATGGAGATGGACATTCTACCAACCATGGAAAGATTATTCATTGGAATTGACGGATTTGCAGAAGATTGATGAAGTCCATGCTTGTCAAGCTCTTCAA
GTAGTTATCTCAAACATTCTCAGTAAGAAGCCTCTTGATCCTCAAGTTTTGTTACCTCAAGATATTGAGATTTCTCGAGTATTTGAGTGGGAAAGAAATCTCGTAAGAAC
GCAAAATTCAAATCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAACATGAAAGGACTCTTTATAATTCTCCATTGATCAAAGTCAACTCCATTGATCAGAACTATGCAGAGGAAGTGATTTCAGCCTTATTTTCTTTTTCAAATGT
TACGAGAGTTCCAGTTGCCTCTAGACTGGTTCATCCAGCTTTTTTCTGTCTCTTTCAGAATCATGGAGCTGATTTGGCACAACTGTTGTCAAAGATACGTTATCCTGAAG
AAGTAAATCCTGCATGGAGATGGACATTCTACCAACCATGGAAAGATTATTCATTGGAATTGACGGATTTGCAGAAGATTGATGAAGTCCATGCTTGTCAAGCTCTTCAA
GTAGTTATCTCAAACATTCTCAGTAAGAAGCCTCTTGATCCTCAAGTTTTGTTACCTCAAGATATTGAGATTTCTCGAGTATTTGAGTGGGAAAGAAATCTCGTAAGAAC
GCAAAATTCAAATCCTTAA
Protein sequenceShow/hide protein sequence
MSQHERTLYNSPLIKVNSIDQNYAEEVISALFSFSNVTRVPVASRLVHPAFFCLFQNHGADLAQLLSKIRYPEEVNPAWRWTFYQPWKDYSLELTDLQKIDEVHACQALQ
VVISNILSKKPLDPQVLLPQDIEISRVFEWERNLVRTQNSNP