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Lag0002057 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002057
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:38855026..38856649
RNA-Seq ExpressionLag0002057
SyntenyLag0002057
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-1343.01Show/hide
Query:  DEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRGR
        D P   GT  K G M ++KWIP++YEKLPDFCY CG++GHV  EC E G +  +   FGV LR+++ S+ + K  + + +   +  R RG G+
Subjt:  DEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRGR

KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]2.4e-1235.92Show/hide
Query:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEA
        I RL     +    E +G  IG     + D+ GK  G+ LRVK+++N+ +PL RG+ V+      K W P  YE LP+FCY CG + HV+ EC+ K  + 
Subjt:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEA

Query:  SKENLFGVELR-ETKGSKGVYKSWKPDYKDNTSGFRSRGRGR
         K   FG  LR E +G +   +      + + SG  S G GR
Subjt:  SKENLFGVELR-ETKGSKGVYKSWKPDYKDNTSGFRSRGRGR

KAF0892003.1 hypothetical protein E2562_012483 [Oryza meyeriana var. granulata]1.8e-1244.9Show/hide
Query:  EALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC-SEKGAEASKENLFGVELR
        E LG  IG +   D DD   M    LRVK+RI++ +PL  G  V  G   EK+W P+ YE LPDFCY CG +GH +  C S+   EA +   +G ELR
Subjt:  EALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC-SEKGAEASKENLFGVELR

XP_021318626.1 uncharacterized protein LOC110436290 [Sorghum bicolor]1.8e-1234.46Show/hide
Query:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC---SEKG
        +S L     + +  + LG  IG +   D  + G   G  LR+K+ I++ +PL RG  VK G    +KW    YE LPDFCY CG +GH+   C   SE G
Subjt:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC---SEKG

Query:  --AEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRG-------RWGKSHQGG-FRNQRERKETEATET
           + S+   F  E R  +G+ G  +S+ P  +    G  S  RG       RWG S  G    N R+  E ++TET
Subjt:  --AEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRG-------RWGKSHQGG-FRNQRERKETEATET

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]2.4e-1229.21Show/hide
Query:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEA
        ++RL     + + A  +G  +G +   D ++     G  LRVK+RI +++PL+RG  +  G   +++W PITYE LPDFCY CG++GH    C  K A A
Subjt:  ISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEA

Query:  SKENLFGVELRETKGSKGV-YKSWKPDYKDNTSGFRSRGRGRWGKSHQGGFRNQRERKETEATETHFPSNTRREFNSFDPRSSKKERWRKDRQDENRVLR
         ++  FG ELR     K    +SW+      + G RS G G W     GG R    R  ++A                         WRKD   E    +
Subjt:  SKENLFGVELRETKGSKGV-YKSWKPDYKDNTSGFRSRGRGRWGKSHQGGFRNQRERKETEATETHFPSNTRREFNSFDPRSSKKERWRKDRQDENRVLR

Query:  GDQE------------NKEKDDDAQK------EPISVEKPPAATAGRGGDRNPAGLPLQTDRIDQTVTDSGGDVTEKISE--IIQPVDKEKSRQLEKGKG
        GD+E              EK D A+K        +S ++  AA AG  G R   G         Q   ++G  V EK+ E      +  EKS Q E    
Subjt:  GDQE------------NKEKDDDAQK------EPISVEKPPAATAGRGGDRNPAGLPLQTDRIDQTVTDSGGDVTEKISE--IIQPVDKEKSRQLEKGKG

Query:  KVEEEASRRQYSSPK
        + +    +RQ    K
Subjt:  KVEEEASRRQYSSPK

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein8.7e-1341.35Show/hide
Query:  SDNTTIGGISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKME
        S   T+G       SK   KY  AL N I +++  +  +  +  GE L+V+ +I+V + L   T +K G+M ++K IP+TYEKL DFCY CG LGHV  E
Subjt:  SDNTTIGGISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKME

Query:  CSEK
        C  K
Subjt:  CSEK

A0A5D3C0K2 Reverse transcriptase1.8e-1343.01Show/hide
Query:  DEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRGR
        D P   GT  K G M ++KWIP++YEKLPDFCY CG++GHV  EC E G +  +   FGV LR+++ S+ + K  + + +   +  R RG G+
Subjt:  DEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRGR

A0A6G1BXB4 zf-CCHC_4 domain-containing protein8.7e-1344.9Show/hide
Query:  EALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC-SEKGAEASKENLFGVELR
        E LG  IG +   D DD   M    LRVK+RI++ +PL  G  V  G   EK+W P+ YE LPDFCY CG +GH +  C S+   EA +   +G ELR
Subjt:  EALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMEC-SEKGAEASKENLFGVELR

B9G5C7 Reverse transcriptase domain-containing protein1.5e-1236.92Show/hide
Query:  ALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKG
        A+G  +G +   D ++ G   G+ LR+KIRI++ +PL RG  +  G+     W P+ YE LPDFCY CG +GH +  C +K AE  +  LF   LR    
Subjt:  ALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKG

Query:  SKGVYKSWKPDYKDNTSGFRSRGRGRWGKS
             K W+    D TSG R + + + G S
Subjt:  SKGVYKSWKPDYKDNTSGFRSRGRGRWGKS

Q8S6P1 Putative reverse transcriptase1.5e-1236.92Show/hide
Query:  ALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKG
        A+G  +G +   D ++ G   G+ LR+KIRI++ +PL RG  +  G+     W P+ YE LPDFCY CG +GH +  C +K AE  +  LF   LR    
Subjt:  ALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEASKENLFGVELRETKG

Query:  SKGVYKSWKPDYKDNTSGFRSRGRGRWGKS
             K W+    D TSG R + + + G S
Subjt:  SKGVYKSWKPDYKDNTSGFRSRGRGRWGKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGACAACACCACTATTGGCGGGATTTCCAGATTAGCGCGCTCGAAGCCCGAATGGAAATATGCGGAGGCTCTAGGGAACGTCATAGGCAACTACGATATAGC
GGATTTTGATGACTACGGGAAGATGGAAGGCGAAACTCTTCGGGTCAAGATAAGAATCAACGTGGATGAACCATTGAAAAGAGGAACTTACGTTAAAACAGGGTCTATGG
TTGAGAAAAAATGGATTCCCATCACGTACGAGAAACTGCCAGACTTTTGTTATTATTGTGGAAAACTGGGACATGTCAAAATGGAATGTAGCGAGAAAGGAGCCGAAGCT
AGCAAAGAAAACCTATTTGGAGTTGAGCTTCGTGAAACCAAAGGAAGTAAAGGTGTTTACAAATCCTGGAAGCCCGATTACAAGGATAATACCAGTGGGTTCAGAAGCAG
GGGCAGAGGTAGATGGGGAAAAAGTCATCAAGGCGGGTTTAGAAACCAAAGAGAGAGAAAAGAAACTGAAGCTACGGAAACCCATTTTCCGTCTAACACTAGGAGAGAAT
TCAACTCCTTTGACCCAAGAAGTTCGAAAAAAGAAAGATGGAGGAAGGATAGACAAGATGAAAATCGAGTCCTTAGGGGTGACCAAGAAAACAAAGAAAAAGATGATGAT
GCCCAGAAAGAACCAATAAGTGTGGAGAAGCCACCGGCGGCCACCGCCGGCAGAGGCGGAGATAGGAATCCGGCAGGTCTCCCTTTGCAGACGGACAGAATAGATCAAAC
GGTCACTGACAGTGGGGGTGATGTTACCGAAAAGATAAGTGAGATTATTCAGCCTGTCGACAAGGAAAAGTCACGTCAATTAGAAAAAGGAAAAGGTAAAGTTGAGGAAG
AGGCCAGTAGGAGACAGTATTCAAGCCCAAAAGCTCTAAAGTTGGGCCAAACAAGAGAAAAGACGGTGGAGAAAATGAAGTTGGGCCCTTCAAGAGAAAAGCTGGTGGAG
AAAATAAAAGGGAAATCCTCAGAAATGACCAGAAATTACAGGATTGCTTCATCGTCTTTTCCAGTAGACTTTTATTTTGTAATCAACAAACCAGATTGCTTCATCGTCTT
TTCCAACCATTCTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAGACAACACCACTATTGGCGGGATTTCCAGATTAGCGCGCTCGAAGCCCGAATGGAAATATGCGGAGGCTCTAGGGAACGTCATAGGCAACTACGATATAGC
GGATTTTGATGACTACGGGAAGATGGAAGGCGAAACTCTTCGGGTCAAGATAAGAATCAACGTGGATGAACCATTGAAAAGAGGAACTTACGTTAAAACAGGGTCTATGG
TTGAGAAAAAATGGATTCCCATCACGTACGAGAAACTGCCAGACTTTTGTTATTATTGTGGAAAACTGGGACATGTCAAAATGGAATGTAGCGAGAAAGGAGCCGAAGCT
AGCAAAGAAAACCTATTTGGAGTTGAGCTTCGTGAAACCAAAGGAAGTAAAGGTGTTTACAAATCCTGGAAGCCCGATTACAAGGATAATACCAGTGGGTTCAGAAGCAG
GGGCAGAGGTAGATGGGGAAAAAGTCATCAAGGCGGGTTTAGAAACCAAAGAGAGAGAAAAGAAACTGAAGCTACGGAAACCCATTTTCCGTCTAACACTAGGAGAGAAT
TCAACTCCTTTGACCCAAGAAGTTCGAAAAAAGAAAGATGGAGGAAGGATAGACAAGATGAAAATCGAGTCCTTAGGGGTGACCAAGAAAACAAAGAAAAAGATGATGAT
GCCCAGAAAGAACCAATAAGTGTGGAGAAGCCACCGGCGGCCACCGCCGGCAGAGGCGGAGATAGGAATCCGGCAGGTCTCCCTTTGCAGACGGACAGAATAGATCAAAC
GGTCACTGACAGTGGGGGTGATGTTACCGAAAAGATAAGTGAGATTATTCAGCCTGTCGACAAGGAAAAGTCACGTCAATTAGAAAAAGGAAAAGGTAAAGTTGAGGAAG
AGGCCAGTAGGAGACAGTATTCAAGCCCAAAAGCTCTAAAGTTGGGCCAAACAAGAGAAAAGACGGTGGAGAAAATGAAGTTGGGCCCTTCAAGAGAAAAGCTGGTGGAG
AAAATAAAAGGGAAATCCTCAGAAATGACCAGAAATTACAGGATTGCTTCATCGTCTTTTCCAGTAGACTTTTATTTTGTAATCAACAAACCAGATTGCTTCATCGTCTT
TTCCAACCATTCTGATTGA
Protein sequenceShow/hide protein sequence
MASDNTTIGGISRLARSKPEWKYAEALGNVIGNYDIADFDDYGKMEGETLRVKIRINVDEPLKRGTYVKTGSMVEKKWIPITYEKLPDFCYYCGKLGHVKMECSEKGAEA
SKENLFGVELRETKGSKGVYKSWKPDYKDNTSGFRSRGRGRWGKSHQGGFRNQRERKETEATETHFPSNTRREFNSFDPRSSKKERWRKDRQDENRVLRGDQENKEKDDD
AQKEPISVEKPPAATAGRGGDRNPAGLPLQTDRIDQTVTDSGGDVTEKISEIIQPVDKEKSRQLEKGKGKVEEEASRRQYSSPKALKLGQTREKTVEKMKLGPSREKLVE
KIKGKSSEMTRNYRIASSSFPVDFYFVINKPDCFIVFSNHSD