CuGenDBv2

Gene ID	Lag0002059
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	transcription initiation factor TFIID subunit 1 isoform X1
Genome location	chr4:38865317..38868531
RNA-Seq Expression	Lag0002059
Synteny	Lag0002059
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR009067 - TAFII-230 TBP-binding IPR036741 - TAFII-230 TBP-binding domain superfamily IPR040240 - Transcription initiation factor TFIID subunit 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593022.1 Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKSPK+PSDA+EP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

KAG7025432.1 Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKSPK+PSDA+EP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

XP_022959797.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata]

1.2e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKSPK+PSDA+EP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

XP_023004897.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima]

8.0e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLG TLTDIDLSTKSPK+PSDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

XP_023513701.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo]

9.4e-38

96.51

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKSPK+PSDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KA05 Uncharacterized protein

8.6e-37

94.19

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDS DERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKS ++ SDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

A0A1S3C886 transcription initiation factor TFIID subunit 1 isoform X1

3.9e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDS DERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKS K+ SDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

A0A5A7SLH8 Transcription initiation factor TFIID subunit 1 isoform X1

3.9e-37

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDS DERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKS K+ SDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

A0A6J1H5J5 transcription initiation factor TFIID subunit 1 isoform X1

5.9e-38

95.35

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Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLGPTLTDIDLSTKSPK+PSDA+EP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

A0A6J1L0S9 transcription initiation factor TFIID subunit 1 isoform X1

3.9e-37

95.35

Show/hide

Query:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP
        MGGETYGDSQDERDEDDDDYEDAGGGNR LGFMFGNVDNSGDLDADYLDEDAKEHL ALADKLG TLTDIDLSTKSPK+PSDAVEP
Subjt:  MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEP

SwissProt top hits

e value

%identity

Alignment

Q67W65 Transcription initiation factor TFIID subunit 1

1.3e-21

73.61

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Query:  DEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE
        D+DD+DY++ GGGN FLGFMFGNVD+SGDLDADYLDEDAKEHL ALADKLGP+L DIDL  K    P+D  E
Subjt:  DEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE

Q8LRK9 Transcription initiation factor TFIID subunit 1

1.5e-17

63.29

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Query:  GDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE
        G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL ALADKLG +L DI+L  KS +  SD  E
Subjt:  GDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE

Arabidopsis top hits

e value

%identity

Alignment

AT1G32750.1 HAC13 protein (HAC13)

1.0e-18

63.29

Show/hide

Query:  GDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE
        G   +   +DDD+YED   G   LGF+FGNVDNSGDLDADYLDEDAKEHL ALADKLG +L DI+L  KS +  SD  E
Subjt:  GDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVE

Sequences

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CDS sequence

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ATGGGTGGCGAAACATATGGTGATTCCCAAGACGAAAGGGATGAAGATGACGACGACTATGAGGATGCTGGTGGTGGCAATCGATTCTTGGGGTTTATGTTCGGGAATGT
GGATAATTCTGGTGATCTTGATGCCGATTATCTTGATGAGGATGCTAAGGAACATCTAGATGCACTGGCTGATAAGTTGGGTCCAACTTTGACAGATATTGATTTGTCAA
CGAAGTCACCAAAAGTACCATCGGATGCTGTTGAACCAGGTGAAGTTGTATTCATGGGAAAATTTACCCAGTAG

mRNA sequence

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Protein sequence

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MGGETYGDSQDERDEDDDDYEDAGGGNRFLGFMFGNVDNSGDLDADYLDEDAKEHLDALADKLGPTLTDIDLSTKSPKVPSDAVEPGEVVFMGKFTQ

Lag0002059 (gene) of Sponge gourd (AG-4) v1 genome