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Lag0002090 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002090
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:39173733..39174346
RNA-Seq ExpressionLag0002090
SyntenyLag0002090
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3482375.1 unnamed protein product [Digitaria exilis]1.3e-0439.19Show/hide
Query:  RGQRANQSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGL
        +G    +    W P P G  K+NVD S++E+ G  GVG   RDS+G  I+SG+R           E RA VEG+
Subjt:  RGQRANQSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGL

CAB4279811.1 unnamed protein product [Prunus armeniaca]5.7e-0534.48Show/hide
Query:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN
        ++  SW  LP G+ K+N DA+W+     GGVGW +RDS G  + +G +  ++  S   +E +AI E L  L  +++  S L + S +
Subjt:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN

KAF8740822.1 hypothetical protein HU200_013702 [Digitaria exilis]5.7e-0537.63Show/hide
Query:  IAAESPLRGQRANQSQAS-WFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWS
        +A ++PL   R    Q S W P P G +K+NVD S++   G  GVG  +RDSLG  I + +R   +       E RA VEGL     + A W+
Subjt:  IAAESPLRGQRANQSQAS-WFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWS

XP_013639386.1 PREDICTED: uncharacterized protein LOC106344576 [Brassica oleracea var. oleracea]9.8e-0542.37Show/hide
Query:  WFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAI
        W P P G  K N DA+W++  G GGVGW +RD  G  +++G +R    ESV+  E  A+
Subjt:  WFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.4e-0539.73Show/hide
Query:  SQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI
        ++  W P P  +W LN DASW +S   GG+GW +R   G  + +G R      +VK+LE  AI+EGL  L ++
Subjt:  SQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI

TrEMBL top hitse value%identityAlignment
A0A5D3E1D7 Transforming growth factor-beta receptor-associated protein 1 isoform X11.8e-0437.23Show/hide
Query:  SPLRGQRANQSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI---RASWSDLS
        SPL  + +  S + W     G+WKLN DA W++S   GG+GW + DS+GS I  G  +++ K     L +  I+E   C   I   R   SDLS
Subjt:  SPLRGQRANQSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI---RASWSDLS

A0A6J1DNV9 uncharacterized protein LOC1110224031.6e-0539.73Show/hide
Query:  SQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI
        ++  W P P  +W LN DASW +S   GG+GW +R   G  + +G R      +VK+LE  AI+EGL  L ++
Subjt:  SQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSI

A0A6J5UV01 Reverse transcriptase domain-containing protein2.8e-0534.48Show/hide
Query:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN
        ++  SW  LP G+ K+N DA+W+     GGVGW +RDS G  + +G +  ++  S   +E +AI E L  L  +++  S L + S +
Subjt:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN

A0A6J5WV05 RNase H domain-containing protein1.1e-0434.94Show/hide
Query:  SWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN
        SW   P G++K+N DA+W+   G G VGW++RDS G  +  G +  ++  S   +E  AI E L  L  ++  +S L + S +
Subjt:  SWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIPSSN

A0A6J5X8F1 Reverse transcriptase domain-containing protein1.4e-0438.24Show/hide
Query:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGL
        ++  SW  LP G+ K+N DA+W+     GGVGW +RDS G  +  G +  ++  S   +E +AI E L
Subjt:  QSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAACTACATCCCACAGTTTATGGAGCTGTCGATATAGCAGCAGAGAGCCCTCTGAGAGGTCAAAGAGCCAATCAGAGTCAAGCTTCTTGGTTTCCCCTTCCGCC
TGGGATGTGGAAGCTCAATGTGGATGCTTCTTGGATCGAATCTCAAGGATTTGGAGGTGTGGGGTGGTCCATGCGTGACTCCTTAGGATCTTCAATCTACTCAGGATATA
GGAGAACCATCAAGAAAGAATCAGTCAAAATGCTGGAAATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGTGCTTCTTGGTCAGACCTCTCCATTCCA
TCGTCAAATCAGACGCCATTGGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAACTACATCCCACAGTTTATGGAGCTGTCGATATAGCAGCAGAGAGCCCTCTGAGAGGTCAAAGAGCCAATCAGAGTCAAGCTTCTTGGTTTCCCCTTCCGCC
TGGGATGTGGAAGCTCAATGTGGATGCTTCTTGGATCGAATCTCAAGGATTTGGAGGTGTGGGGTGGTCCATGCGTGACTCCTTAGGATCTTCAATCTACTCAGGATATA
GGAGAACCATCAAGAAAGAATCAGTCAAAATGCTGGAAATGAGAGCCATTGTTGAAGGGTTAAATTGCTTACCTTCGATCCGTGCTTCTTGGTCAGACCTCTCCATTCCA
TCGTCAAATCAGACGCCATTGGCGTGA
Protein sequenceShow/hide protein sequence
MRKLHPTVYGAVDIAAESPLRGQRANQSQASWFPLPPGMWKLNVDASWIESQGFGGVGWSMRDSLGSSIYSGYRRTIKKESVKMLEMRAIVEGLNCLPSIRASWSDLSIP
SSNQTPLA