; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002109 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002109
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr4:39394375..39395412
RNA-Seq ExpressionLag0002109
SyntenyLag0002109
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032941.1 hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]3.6e-2166.67Show/hide
Query:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        MA  KEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRK SV INTEGS    P
Subjt:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-2164.29Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-2165.31Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  KEENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRKFSV INTE SL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-2164.29Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

KAA0057874.1 gag protease polyprotein [Cucumis melo var. makuwa]8.1e-2165.62Show/hide
Query:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        MA  +EENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+H+R+SSRMKRK SV INTEGSL   P
Subjt:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7STU1 Uncharacterized protein1.8e-2166.67Show/hide
Query:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        MA  KEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRK SV INTEGS    P
Subjt:  MAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7SZJ7 Retrotransposon gag protein2.3e-2164.29Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  +EENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7TJH2 Retrotransposon gag protein3.0e-2165.31Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  KEENQC  ST  R SAF+RLS+STSKK R  TS FDRLK+TNDQ +R+M  L+ K F E N D K+HSR+SSRMKRKFSV INTE SL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5A7TQ06 Retrotransposon gag protein3.9e-2164.29Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein3.9e-2164.29Show/hide
Query:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP
        +SMA  +EENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HSR+ SRMKRK SV INTEGSL   P
Subjt:  MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGT
TCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGT
TCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCA
CGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGATTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAAAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGAATCTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTACAGT
TCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGT
TCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCA
CGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGATTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA
Protein sequenceShow/hide protein sequence
MSMAATKEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSRISSRMKRKFSVLINTEGSLKFLPPKFEGSHALRYS
SFLTVRRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEGSHALRCSFFSLSSKVLTRFDAVPSSLSSKILTRFAAVPSSKFEGFEGSHAL