CuGenDBv2

Gene ID	Lag0002138
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	thioredoxin-like protein 4B
Genome location	chr4:39739105..39740481
RNA-Seq Expression	Lag0002138
Synteny	Lag0002138
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0005682 - U5 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domains	IPR004123 - Dim1 family IPR036249 - Thioredoxin-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-57

97.48

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFH+KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]

5.7e-57

96.64

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKW+GAFHQKQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]

1.2e-57

98.32

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFHQKQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]

4.4e-57

97.48

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFH+KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]

7.5e-57

96.64

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFH+KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BH38 thioredoxin-like protein 4B

1.8e-56

95.8

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKW+GAFHQKQ+FIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

A0A6J1DGN8 thioredoxin-like protein 4B

5.6e-58

98.32

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFHQKQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

A0A6J1GQC5 thioredoxin-like protein 4B

2.1e-57

97.48

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFH+KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

A0A6J1JT18 thioredoxin-like protein 4B

3.6e-57

96.64

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKWIGAFH+KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

A0A6P4ATD0 thioredoxin-like protein 4B

3.2e-53

89.08

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLTKKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVYV YFDITLIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKW+GAFHQKQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

SwissProt top hits

e value

%identity

Alignment

P83876 Thioredoxin-like protein 4A

1.0e-11

34.45

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        + K   A   KQ+ +D++E
Subjt:  HTKWIGAFHQKQDFIDVVE

P83877 Thioredoxin-like protein 4A

1.0e-11

34.45

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        + K   A   KQ+ +D++E
Subjt:  HTKWIGAFHQKQDFIDVVE

Q8BUH1 Thioredoxin-like protein 4B

2.1e-33

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEV
        HTK++G+F  KQDFID++EV
Subjt:  HTKWIGAFHQKQDFIDVVEV

Q9FE62 Thioredoxin-like protein YLS8

1.7e-11

37.19

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVE
         ++ K   A   KQ+FID++E
Subjt:  ADHTKWIGAFHQKQDFIDVVE

Q9NX01 Thioredoxin-like protein 4B

1.2e-33

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEV
        HTK++G+F  KQDFID++EV
Subjt:  HTKWIGAFHQKQDFIDVVEV

Arabidopsis top hits

e value

%identity

Alignment

AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP

1.1e-50

78.15

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVYVKYFDITL PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVE
        HTKW+GAFH KQDFIDVVE
Subjt:  HTKWIGAFHQKQDFIDVVE

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP

1.2e-12

37.19

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Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYVKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVE
         ++ K   A   KQ+FID++E
Subjt:  ADHTKWIGAFHQKQDFIDVVE

Sequences

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CDS sequence

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ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGT
TTGTCTCCTCCTTGACGATATTCTTGCAAAGTGCGCACGAGAAGTGTCGAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACGTCAAGT
ATTTTGACATAACTCTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAA
AAGCAGGATTTTATTGATGTTGTGGAGGTATGGCCACTGGCTGTTGAACATAAAAGAGAAGCTGTGTATGAAACAGATTGTTGA

mRNA sequence

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Protein sequence

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MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYVKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQ
KQDFIDVVEVWPLAVEHKREAVYETDC

Lag0002138 (gene) of Sponge gourd (AG-4) v1 genome