CuGenDBv2

Gene ID	Lag0002165
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNase H domain-containing protein
Genome location	chr4:40047754..40048484
RNA-Seq Expression	Lag0002165
Synteny	Lag0002165
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_015388376.1 uncharacterized protein LOC102612209 [Citrus sinensis]

2.6e-11

31.39

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        WKPP + ++K+NVDA   +     GLG +  +S G +I A  K+ S K  +  +E+ AI+ G+ Q++ + +  P      +++ESD+ E+V+L+      
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
        ++E+S  ++EI+   +  N +S  F+PR  N +AH +
Subjt:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]

5.2e-12

37.25

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W  P  N WK+N DA+W  +  +GG+GWI  D  G ++ AG  K  +K EIN LE + I+ GL  I+ + ++        + +ESD+VE+++L+ +E +D
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LS
        L+
Subjt:  LS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.2e-13

35.25

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET
        WKPP  N WK+N +A W  D + GG+GWI RD +G +I A  +    +  I  LE +AI EGL  I          Q+H   + +ESD++E + LL+R+ 
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET

Query:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
         D +E+  +++EI  +     + S     R +N +AH L
Subjt:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

5.2e-12

32.85

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W+PP  + W +N DA+W      GG+GWI R  +G ++ AG +       + LLE+ AI+EGL  ++      P      + +E+D+ E+  LLNR+  D
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
        L++   V++EI  L     + +F+   R +N  AH L
Subjt:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

6.6e-15

36.69

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET
        WKPP  N WK+N DA W  D + GG+GWI RD +G +I A  +    +  I  LE +AI EGL  I  +    P  Q+H   + +ESD++E + LL+R+ 
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET

Query:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
         D +E+  +++EI  +     + S     R +N +AH L
Subjt:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

6.0e-14

35.25

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET
        WKPP  N WK+N +A W  D + GG+GWI RD +G +I A  +    +  I  LE +AI EGL  I          Q+H   + +ESD++E + LL+R+ 
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET

Query:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
         D +E+  +++EI  +     + S     R +N +AH L
Subjt:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

A0A6J1CQG0 uncharacterized protein LOC111013216

2.5e-12

37.25

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W  P  N WK+N DA+W  +  +GG+GWI  D  G ++ AG  K  +K EIN LE + I+ GL  I+ + ++        + +ESD+VE+++L+ +E +D
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LS
        L+
Subjt:  LS

A0A6J1D4B6 uncharacterized protein LOC111017181

2.8e-11

33.33

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W PP ++ WK+NVDATW      GGLGWI RDSEG  I A   K        L +SL +  G+                ++ +ESD +E+V ++N+ ++ 
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAH
        L+EVS+++++I        +  F   P  +N +AH
Subjt:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAH

A0A6J1DNV9 uncharacterized protein LOC111022403

2.5e-12

32.85

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W+PP  + W +N DA+W      GG+GWI R  +G ++ AG +       + LLE+ AI+EGL  ++      P      + +E+D+ E+  LLNR+  D
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
        L++   V++EI  L     + +F+   R +N  AH L
Subjt:  LSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

A0A6J1DSV1 uncharacterized protein LOC111023608

3.2e-15

36.69

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET
        WKPP  N WK+N DA W  D + GG+GWI RD +G +I A  +    +  I  LE +AI EGL  I  +    P  Q+H   + +ESD++E + LL+R+ 
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDH--EVVVESDAVEIVKLLNRET

Query:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL
         D +E+  +++EI  +     + S     R +N +AH L
Subjt:  IDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

1.6e-06

27.01

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGK---KTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRE
        WK P     K N DATW ++    G+GWI R+  G ++  G +   +T   +E  L      V  +++ + K           ++ ESDA  +V LLN +
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGK---KTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRE

Query:  TIDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLA
              +   +++I+ L        F F+PR  N +A
Subjt:  TIDLSEVSVVIDEIRGLALQANVASFSFSPRSSNFLA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

3.9e-05

25.19

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Query:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID
        W PP  ++ K N DA+     ++ GLGWI R+S+G++I  G  K   ++     E   ++  +       QA       +V+ E D   I +++N ++ +
Subjt:  WKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETID

Query:  LSEVSVVIDEIRGLALQANVASFSFSPRSSN
           +   +D I+          FSF  R  N
Subjt:  LSEVSVVIDEIRGLALQANVASFSFSPRSSN

Sequences

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CDS sequence

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ATGTGTTGTTGGAAGCCGCCAAAGGAGAATCAGTGGAAGATTAACGTCGATGCAACCTGGTTTGTCGATGCCAGCATTGGCGGTTTAGGGTGGATAGAGCGCGAC
TCCGAAGGTTCTCTGATCGGAGCTGGTGGGAAGAAAACATCAAAGAAAATCGAGATCAATTTGTTGGAATCCCTCGCTATTGTCGAAGGGCTCAATCAAATTTCT
ACAAAATTTCAAGCGTACCCGGAAATTCAAGATCACGAGGTGGTAGTCGAGTCAGACGCGGTTGAGATAGTGAAGCTGCTTAATCGGGAAACGATCGACCTTTCA
GAGGTCTCTGTCGTCATCGATGAGATCCGTGGACTGGCGTTGCAAGCAAATGTAGCGTCGTTCAGCTTCAGTCCAAGATCTTCAAATTTTTTGGCGCATCCCTTG
CGCGCAGGGGAAGTTTTTTTGGCCCCCTGGTTTTCCTCAATTGTGGAGGATCTGGTTGTTGTACCAAACCGTTTGCCCTCTTAA

mRNA sequence

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Protein sequence

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MCCWKPPKENQWKINVDATWFVDASIGGLGWIERDSEGSLIGAGGKKTSKKIEINLLESLAIVEGLNQISTKFQAYPEIQDHEVVVESDAVEIVKLLNRETIDLS
EVSVVIDEIRGLALQANVASFSFSPRSSNFLAHPLRAGEVFLAPWFSSIVEDLVVVPNRLPS

Lag0002165 (gene) of Sponge gourd (AG-4) v1 genome