CuGenDBv2

Gene ID	Lag0002221
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S27
Genome location	chr4:40664465..40665031
RNA-Seq Expression	Lag0002221
Synteny	Lag0002221
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0042788 - polysomal ribosome (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000592 - Ribosomal protein S27 IPR011332 - Zinc-binding ribosomal protein IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592828.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-41

97.67

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]

7.3e-42

98.84

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022148956.1 40S ribosomal protein S27-2-like [Momordica charantia]

2.5e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022960233.1 40S ribosomal protein S27-2-like [Cucurbita moschata]

1.2e-41

97.67

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]

1.6e-41

97.67

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9G0 40S ribosomal protein S27

3.5e-42

98.84

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A1S3CCJ2 40S ribosomal protein S27

3.5e-42

98.84

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S27

3.5e-42

98.84

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1D6X7 40S ribosomal protein S27

1.2e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

E5GB53 40S ribosomal protein S27

3.5e-42

98.84

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hits

e value

%identity

Alignment

O64650 40S ribosomal protein S27-1

2.2e-41

92.86

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S27

9.6e-37

83.72

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-3

1.4e-40

91.67

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S27

6.4e-41

91.86

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ VLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-2

2.8e-44

96.51

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G45710.1 Zinc-binding ribosomal protein family protein

1.6e-42

92.86

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S27

2.0e-45

96.51

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein

5.8e-37

82.56

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein

1.0e-41

91.67

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

Sequences

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CDS sequence

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ATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGT
GAAGTGCCAGGGTTGCTTTAACATAACCACTGTGTTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAGCCAACTGGAGGGCGCGCTA
AGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA

mRNA sequence

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Protein sequence

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MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Lag0002221 (gene) of Sponge gourd (AG-4) v1 genome