; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002240 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002240
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLITAF domain-containing protein
Genome locationchr4:40813995..40815713
RNA-Seq ExpressionLag0002240
SyntenyLag0002240
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006629 - LPS-induced tumour necrosis factor alpha factor
IPR037519 - LITAF domain containing protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]3.4e-7091.73Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP YV NN YQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPF CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]2.6e-7091.73Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP YV NN YQAGQIPPNAIFGDP GVPIQQTMYRDTPAPF CVYCGNSGLT IRSKISSAA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]9.9e-7090.3Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFYV NNAYQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]1.3e-6989.55Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFYV NN+YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]1.3e-6989.55Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y  NN YQAGQIP NAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTD+RSKISSAA +GCM PF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK+DRCAVMDPP+WTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

TrEMBL top hitse value%identityAlignment
A0A0A0KDG7 LITAF domain-containing protein1.3e-7091.73Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP YV NN YQAGQIPPNAIFGDP GVPIQQTMYRDTPAPF CVYCGNSGLT IRSKISSAA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A1S3CCH3 uncharacterized protein LOC1034988816.2e-7090.98Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP YV NN YQAGQIPPN IFGDPQGVPIQQTMYRDTPAPF CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein1.6e-7091.73Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVP YV NN YQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPF CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A6J1GS01 GSH-induced LITAF domain protein4.8e-7090.3Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFYV NNAYQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein6.2e-7089.55Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PFYV NN+YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT IRSKIS AA +GCM+PFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

SwissProt top hitse value%identityAlignment
P0C0T0 Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog3.4e-0427.45Show/hide
Query:  AYQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG----CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFE
        +Y    +P PNA     Q V +QQ + + D P    C  C    +T +     +  ++     C++  + G CF+   +D L    HYCP+CK  +G ++
Subjt:  AYQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG----CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFE

Query:  KL
        +L
Subjt:  KL

Q94CD4 GSH-induced LITAF domain protein2.4e-5568.66Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP+Y   N YQAG +PPNAI+GDP G PIQQT+YRDTPAPF C+YCGN+GLT++RSK   AA + CM+PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Q9JLJ0 Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog2.6e-0427.45Show/hide
Query:  AYQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG----CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFE
        +Y    +P PNA     Q V +QQ + + D P    C  C    +T +     +  ++     C++  + G CF+   +D L    HYCP+CK  +G ++
Subjt:  AYQAGQIP-PNAIFGDPQGVPIQQTM-YRDTPAPFYCVYCGNSGLTDIRSKISSAAFIG----CMVPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFE

Query:  KL
        +L
Subjt:  KL

Arabidopsis top hitse value%identityAlignment
AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).1.7e-5668.66Show/hide
Query:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP+Y   N YQAG +PPNAI+GDP G PIQQT+YRDTPAPF C+YCGN+GLT++RSK   AA + CM+PFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAACGACGAGCCGGTCGTCGGAGTTCCATTCTATGTGGAGAACAACGCGTATCAGGCCGGACAGATCCCACCGAACGCCATTTTTGGCGATCCTCAG
GGCGTTCCTATCCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGGAATTCCGGTCTCACCGACATCAGATCAAAGATAAGTTCA
GCTGCTTTCATTGGTTGTATGGTGCCTTTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTACCACTATTGCCCCAGCTGCAAG
GAAAAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACCCAGCCAAGCTTTGCATTGCCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAAGAACGACGAGCCGGTCGTCGGAGTTCCATTCTATGTGGAGAACAACGCGTATCAGGCCGGACAGATCCCACCGAACGCCATTTTTGGCGATCCTCAG
GGCGTTCCTATCCAGCAAACCATGTACCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGGAATTCCGGTCTCACCGACATCAGATCAAAGATAAGTTCA
GCTGCTTTCATTGGTTGTATGGTGCCTTTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTACCACTATTGCCCCAGCTGCAAG
GAAAAGGTTGGTGATTTTGAGAAATTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACCCAGCCAAGCTTTGCATTGCCTGCTTGA
Protein sequenceShow/hide protein sequence
MSKNDEPVVGVPFYVENNAYQAGQIPPNAIFGDPQGVPIQQTMYRDTPAPFYCVYCGNSGLTDIRSKISSAAFIGCMVPFMLGVCFLCPSMDCLWHKYHYCPSCK
EKVGDFEKLDRCAVMDPPHWTQPSFALPA