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Lag0002256 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002256
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:40968801..40969523
RNA-Seq ExpressionLag0002256
SyntenyLag0002256
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015387358.1 uncharacterized protein LOC107177672 [Citrus sinensis]4.1e-1033.58Show/hide
Query:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI
        P   + +NVDA+      + G+G++VR+S+G II +  K++     +  ME +A+L GI+         Q ++ LP+ + SD++ V+ L+      L E+
Subjt:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI

Query:  SFLVEEIK-QLITGYEISFAHIPRSQNVQAHMLARFA
        S+ VEEIK QL      S  ++PR  NV AH +A+ A
Subjt:  SFLVEEIK-QLITGYEISFAHIPRSQNVQAHMLARFA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.3e-1331.6Show/hide
Query:  EKFKEEELEVAVLILWELLWNHINNIL----HTSAS------------------PNLKFLITPVESKTEGAPPSS--WNLNVDASCDEFQNRGGVGSIVR
        +K  +E+L+V ++  W ++WNH N ++    H+S S                   +L  L   + +K +  PP    W LN DAS  +  +RGG+G I+R
Subjt:  EKFKEEELEVAVLILWELLWNHINNIL----HTSAS------------------PNLKFLITPVESKTEGAPPSS--WNLNVDASCDEFQNRGGVGSIVR

Query:  DSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDIL-PIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGYEI-SFAHIPRSQ
           G I+ +G + +     +K++E  AIL G+R L        NL +L P+ + +D++ V +LLN+   DL +  ++VEEI  L    EI +FA + R  
Subjt:  DSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDIL-PIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGYEI-SFAHIPRSQ

Query:  NVQAHMLARFAA
        N  AH LA+ A+
Subjt:  NVQAHMLARFAA

XP_024033599.1 uncharacterized protein LOC112095720 [Citrus clementina]8.3e-1135.77Show/hide
Query:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI
        PP  + +NVDA+ +  + RGG+G++VRDS G  + +  +R      +  ME +A+L+GI+      A + N     IE  SD+  V+ L+ K    L EI
Subjt:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI

Query:  SFLVEEIKQLITGYE-ISFAHIPRSQNVQAHMLARFA
        S+ +EEI++ + G    S  ++PR  NV+AH LA+ A
Subjt:  SFLVEEIKQLITGYE-ISFAHIPRSQNVQAHMLARFA

XP_024042448.1 uncharacterized protein LOC112099303 [Citrus clementina]6.4e-1135.77Show/hide
Query:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI
        PP  + +NVDA+ +  + RGG+G++VRDS G  + +  +R      +  ME +A+L+GI+      A + N     IE  SD+  V+ L+ K    L EI
Subjt:  PPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEI

Query:  SFLVEEIKQLITGYE-ISFAHIPRSQNVQAHMLARFA
        S+ +EEI++ + G    S  ++PR  NV+AH LA+ A
Subjt:  SFLVEEIKQLITGYE-ISFAHIPRSQNVQAHMLARFA

XP_030487551.1 uncharacterized protein LOC115704487 [Cannabis sativa]1.1e-1030.67Show/hide
Query:  NNILHTSASPNLKFLITPVESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDI
        + +   +A+ + + L+ P   + +  P SS+ LNVDA+ D  ++  GVG++VRDS+GS++ +  K + GN+    ME KA+   I  +L        L++
Subjt:  NNILHTSASPNLKFLITPVESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDI

Query:  LPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA
            + +DA  V N L  S   ++    L+ +I  L++    +S  H+ R+ N+ AH LAR+A
Subjt:  LPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.3e-0937.25Show/hide
Query:  LITPVESKT--EGAPP--SSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDAS
        LI  +E  T  +  PP  +SW LN +A+     N GG+G I+RD  G +I +  + I     +  +E+ AI  G+R   AIR         PI + SD+ 
Subjt:  LITPVESKT--EGAPP--SSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDAS

Query:  GVINLLNKSDYDLAEISFLVEEIKQLITGYEI-SFAHIPRSQNVQAHMLARFA
          I+LL++   D  EI +L+EEI Q++   EI S  HI R  N  AH LAR A
Subjt:  GVINLLNKSDYDLAEISFLVEEIKQLITGYEI-SFAHIPRSQNVQAHMLARFA

A0A803NGI9 Uncharacterized protein1.3e-0931.22Show/hide
Query:  ELEVAVLILWELLWNHINNILH--TSASP------------NLKFLIT---PVESKTEGAPPSSW--------NLNVDASCDEFQNRGGVGSIVRDSSGS
        E+E  +  LW  LWN  NN +H     SP            N +   T    +   T  A    W         +NVDA+CD  +N+ GVG I+R+SSG 
Subjt:  ELEVAVLILWELLWNHINNILH--TSASP------------NLKFLIT---PVESKTEGAPPSSW--------NLNVDASCDEFQNRGGVGSIVRDSSGS

Query:  IICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHM
        ++ +  K + G    + ME KA+LIGI       A+R NL I   E  SD+  ++N +N     ++    LV +IK  ++    +  +H+ R  N  AH 
Subjt:  IICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHM

Query:  LARFA
        LA+ A
Subjt:  LARFA

A0A803NI87 Uncharacterized protein7.6e-1030.57Show/hide
Query:  LWELLWNHINNILHTSASPNLKFLIT--PVESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLL
        +W     +  N  H S   N   + T    +SK    P +   +NVDA+CD  +N+ GVG IVR+SSG I+ +  K   G +  + ME KA+L G+    
Subjt:  LWELLWNHINNILHTSASPNLKFLIT--PVESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLL

Query:  AIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA-AFESFGCSNWVLDPSSNS
           A+  NL +  +E  SD+  ++N +N     ++    LV +IK  ++    +  +H+ R  N  AH LA+ A   ++  C N +   SS S
Subjt:  AIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA-AFESFGCSNWVLDPSSNS

A0A803P9C5 Uncharacterized protein4.5e-1025.81Show/hide
Query:  FKEEELEVAVLILWELLWNHINNILHTSASPNLKFLITPV-ESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEM
        + +++LE  + ++W  +W++ N+ +H +++P      +P+  +K +  P +++ LNVDA+ D  +++ G+G IVR+S+G ++ +  K   GN+  + ME 
Subjt:  FKEEELEVAVLILWELLWNHINNILHTSASPNLKFLITPV-ESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEM

Query:  KAILIGIRCLLAIRASRQNLDILPIEVV-SDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA
        KA+ +G+      +        +PI+ V +D   ++N LN      +    LV ++   ++ +  +  +H+ R  N  AH LA+ A
Subjt:  KAILIGIRCLLAIRASRQNLDILPIEVV-SDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFA

A0A803QGR4 Uncharacterized protein1.8e-1128.76Show/hide
Query:  FKEEELEVAVLILWELLWNHINNILHTSASPNLKFLI---------------------TPVESKTEGAPPSSW--------NLNVDASCDEFQNRGGVGS
        + + ++E  +  +W  +W   NN++H  A    K                            S  E  P   W         LNVDA+CD+ +N  G+G+
Subjt:  FKEEELEVAVLILWELLWNHINNILHTSASPNLKFLI---------------------TPVESKTEGAPPSSW--------NLNVDASCDEFQNRGGVGS

Query:  IVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPR
        I+RD+ G +I +  K I GN+    ME KA+   +   LAI+     L  L  ++ +DA  V N LN S   ++    L+ +I  L++ +  +S  H+ R
Subjt:  IVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGY-EISFAHIPR

Query:  SQNVQAHMLARFAAFESFGCSNWV--LDPSSNS
        S N+  H LAR+A      CS W+  L PS +S
Subjt:  SQNVQAHMLARFAAFESFGCSNWV--LDPSSNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0730.2Show/hide
Query:  APPSSW-NLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLA
        APP  W   N DA+      R G+G I+R+ SG ++  G + +     +   E++A+   +     +  SR N   +  E  SDA  ++NLLN  D+   
Subjt:  APPSSW-NLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMKAILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLA

Query:  EISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFAAFESFGCSNW
         +   +E+I+QL+  + E+ F   PR  N  A  +AR    ES   SN+
Subjt:  EISFLVEEIKQLITGY-EISFAHIPRSQNVQAHMLARFAAFESFGCSNW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATTGGGCTTTGGATCAACGAAAAGTTTAAAGAAGAAGAGCTTGAAGTTGCTGTGCTAATTCTATGGGAGCTACTATGGAATCACATAAACAATATTTTGCACAC
ATCAGCCTCGCCTAATCTGAAATTTCTCATCACACCAGTGGAATCAAAAACAGAGGGGGCGCCTCCCAGTTCATGGAACCTCAATGTGGACGCCTCTTGCGATGAATTCC
AAAACAGAGGGGGCGTTGGTTCGATAGTGCGTGACTCCTCCGGTTCTATTATCTGCTCAGGTTTCAAGAGAATAGCAGGCAATTGGCCTCTTAAAATGATGGAGATGAAG
GCGATCCTTATAGGTATTAGATGCTTATTGGCTATAAGAGCTTCGCGCCAAAATCTGGATATCCTGCCGATAGAAGTCGTCTCAGATGCTAGCGGTGTCATTAACCTGCT
GAACAAATCAGATTATGATTTAGCAGAGATTTCGTTCTTAGTAGAAGAAATCAAGCAATTGATCACTGGCTATGAAATCTCCTTCGCTCATATCCCTCGTTCGCAAAATG
TTCAGGCACACATGTTGGCGCGTTTTGCTGCTTTCGAGTCTTTTGGGTGTAGCAATTGGGTTTTGGATCCCTCTTCCAATTCAGAAGAGGGGATTTTTTTGTTGGGTCGG
GTTGAACACAACTTTTTAAACTCTCTTTTAAGGGAGGTTGTTGTTTCGTCTTTTCCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTATTGGGCTTTGGATCAACGAAAAGTTTAAAGAAGAAGAGCTTGAAGTTGCTGTGCTAATTCTATGGGAGCTACTATGGAATCACATAAACAATATTTTGCACAC
ATCAGCCTCGCCTAATCTGAAATTTCTCATCACACCAGTGGAATCAAAAACAGAGGGGGCGCCTCCCAGTTCATGGAACCTCAATGTGGACGCCTCTTGCGATGAATTCC
AAAACAGAGGGGGCGTTGGTTCGATAGTGCGTGACTCCTCCGGTTCTATTATCTGCTCAGGTTTCAAGAGAATAGCAGGCAATTGGCCTCTTAAAATGATGGAGATGAAG
GCGATCCTTATAGGTATTAGATGCTTATTGGCTATAAGAGCTTCGCGCCAAAATCTGGATATCCTGCCGATAGAAGTCGTCTCAGATGCTAGCGGTGTCATTAACCTGCT
GAACAAATCAGATTATGATTTAGCAGAGATTTCGTTCTTAGTAGAAGAAATCAAGCAATTGATCACTGGCTATGAAATCTCCTTCGCTCATATCCCTCGTTCGCAAAATG
TTCAGGCACACATGTTGGCGCGTTTTGCTGCTTTCGAGTCTTTTGGGTGTAGCAATTGGGTTTTGGATCCCTCTTCCAATTCAGAAGAGGGGATTTTTTTGTTGGGTCGG
GTTGAACACAACTTTTTAAACTCTCTTTTAAGGGAGGTTGTTGTTTCGTCTTTTCCTCTTTAA
Protein sequenceShow/hide protein sequence
MTIGLWINEKFKEEELEVAVLILWELLWNHINNILHTSASPNLKFLITPVESKTEGAPPSSWNLNVDASCDEFQNRGGVGSIVRDSSGSIICSGFKRIAGNWPLKMMEMK
AILIGIRCLLAIRASRQNLDILPIEVVSDASGVINLLNKSDYDLAEISFLVEEIKQLITGYEISFAHIPRSQNVQAHMLARFAAFESFGCSNWVLDPSSNSEEGIFLLGR
VEHNFLNSLLREVVVSSFPL