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Lag0002267 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002267
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:41116906..41117580
RNA-Seq ExpressionLag0002267
SyntenyLag0002267
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG72024.1 hypothetical protein EZV62_000603 [Acer yangbiense]3.5e-2744.44Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP
        FD +L+VL+EP   G++  + FN   FWVQI NVPM   T+++ + LG  IG V EV     GD  G  +R+RV + +D PLRR  ++    +G E   P
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP

Query:  VLYERLPDFCYDCGCLGHSRRECGVIREGNLEQ-QGEQYGDWLRAGAGLGESGRRTQEGGVD
        + YERLP FC+ CG +GHS REC    E  L +  G  YG WLRA A L + GR    G VD
Subjt:  VLYERLPDFCYDCGCLGHSRRECGVIREGNLEQ-QGEQYGDWLRAGAGLGESGRRTQEGGVD

XP_015380691.1 uncharacterized protein LOC107174364 [Citrus sinensis]4.5e-2741.96Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        FDR+L+VL EP+  G +    F   AFW+QI NVP+    +E+ ++LG  IG VEE+   + G+  G   RIRVL+ +  PL++   L+ E   + + PV
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA
        +YERLPDFCY CG +GH  +EC   +    EQ    YG W++A
Subjt:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.7e-3748.95Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        F++SL+VL  P +    LD+ FN CAFW+QIHN+P    + EMA  LG K+G VEE+ G     W GP +R+RV + + +PLRRG +L++ +G++  CP+
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA
         YE+LPDFCY+CG +GHS REC    +       EQYGDWLRA
Subjt:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]2.2e-2947.93Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        FD+SL++L    +A   LD++ + CAFWVQIH +     T++MA+ LG ++G VEEV G    DW  P L +RV + + +PLRRG +++  +G++  CP+
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRE
         YERLPDFCY CGC+GHS RE
Subjt:  LYERLPDFCYDCGCLGHSRRE

XP_024033132.1 uncharacterized protein LOC112095437 [Citrus clementina]5.4e-2839.86Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        FDR+L+VL+EP+  GS+    F+  +FW++IHNVP+      + R+LG ++G VE++G    G+  G  +RI+V + + +PL++   L+ E+  +   PV
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQ-----YGDWLRA
        +YERLPDFC+ CGC+GH  REC       +E +G+Q     +G WL+A
Subjt:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQ-----YGDWLRA

TrEMBL top hitse value%identityAlignment
A0A5C7GUN1 Uncharacterized protein1.9e-2642.59Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP
        FD +L+VL+EP   G++  + FN   FWV I NVPM + T+++ + LG  IG V EV      D  G  +R+RV + +D+PLRR  ++    +G E   P
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP

Query:  VLYERLPDFCYDCGCLGHSRRECGVIREGNL-EQQGEQYGDWLRAGAGLGESGRRTQEGGVD
        + YERLP FC+ CG +GH   EC    E  L E  G  YG WLRA A L + GR    G VD
Subjt:  VLYERLPDFCYDCGCLGHSRRECGVIREGNL-EQQGEQYGDWLRAGAGLGESGRRTQEGGVD

A0A5C7H3J1 CCHC-type domain-containing protein7.1e-2642.14Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        FD++L+VL+EP   G +  + FN  AFW+QIHNVP+     E+ R LGE +G V+EV   + GD  G  +R+RV++++D+PL R  ++ D  G E    +
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  L--YERLPDFCYDCGCLGHSRRECGVIREGN-LEQQGEQYGDWLRAGAGLGESGRRTQE
        L  Y+RLP+ CY CG LGH+ R+C   + GN LE   + +G WL+A + + +SGR  Q+
Subjt:  L--YERLPDFCYDCGCLGHSRRECGVIREGN-LEQQGEQYGDWLRAGAGLGESGRRTQE

A0A5C7IT66 CCHC-type domain-containing protein1.7e-2744.44Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP
        FD +L+VL+EP   G++  + FN   FWVQI NVPM   T+++ + LG  IG V EV     GD  G  +R+RV + +D PLRR  ++    +G E   P
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQD-EEGREFRCP

Query:  VLYERLPDFCYDCGCLGHSRRECGVIREGNLEQ-QGEQYGDWLRAGAGLGESGRRTQEGGVD
        + YERLP FC+ CG +GHS REC    E  L +  G  YG WLRA A L + GR    G VD
Subjt:  VLYERLPDFCYDCGCLGHSRRECGVIREGNLEQ-QGEQYGDWLRAGAGLGESGRRTQEGGVD

A0A6J1D765 uncharacterized protein LOC1110179021.8e-3748.95Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        F++SL+VL  P +    LD+ FN CAFW+QIHN+P    + EMA  LG K+G VEE+ G     W GP +R+RV + + +PLRRG +L++ +G++  CP+
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA
         YE+LPDFCY+CG +GHS REC    +       EQYGDWLRA
Subjt:  LYERLPDFCYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRA

A0A6J1DVS4 uncharacterized protein LOC1110235551.1e-2947.93Show/hide
Query:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV
        FD+SL++L    +A   LD++ + CAFWVQIH +     T++MA+ LG ++G VEEV G    DW  P L +RV + + +PLRRG +++  +G++  CP+
Subjt:  FDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPV

Query:  LYERLPDFCYDCGCLGHSRRE
         YERLPDFCY CGC+GHS RE
Subjt:  LYERLPDFCYDCGCLGHSRRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding2.3e-0528.85Show/hide
Query:  DVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPVLYERLPDFCYDCGCLGHS
        D EF    FW+QI  +P+R+ T  +   +GE++G                       L L+  L R     D    +F+    YE+L +FC  CG L H 
Subjt:  DVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPVLYERLPDFCYDCGCLGHS

Query:  RREC
          EC
Subjt:  RREC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTGACCGGTCTCTGGTGGTGCTGAAGGAGCCGAGGTCTGCGGGATCGGTGTTGGATGTGGAGTTTAATGATTGTGCTTTCTGGGTGCAGATTCATAATGTCCC
TATGCGTTGGCAGACAAGGGAGATGGCTCGACAGTTGGGAGAGAAGATCGGAACTGTGGAGGAAGTTGGTGGATCGCAGGGAGGTGACTGGACAGGGCCGATTCTTCGAA
TAAGGGTCCTTTTGAGGTTGGATCGCCCACTCAGGAGGGGATTCCAATTGCAGGATGAGGAGGGCAGGGAGTTTCGGTGTCCGGTCTTGTATGAGCGATTACCAGATTTT
TGTTACGACTGTGGCTGCCTGGGGCACTCGAGGAGGGAGTGTGGGGTGATTAGGGAAGGTAATCTGGAACAGCAGGGCGAACAGTATGGTGATTGGCTGAGAGCAGGGGC
AGGGCTTGGGGAGTCTGGAAGGCGCACTCAGGAGGGAGGGGTGGATAATGCAGCGATTCGGAGACCTGAGATCCCAAAGCCCCCTACTGAGGGACAGGTGACTCAGGATT
CTGTTCCTGAGAAAGCAGGGAAGGAGTTGCTAGTGCGTCAGGGGAGGGTGTGGGAGTGCAGGTTAGTGAGCAGGGAGGTCAGGGGGAAGGGGGTAGTGGAGAGGGGGATA
GCGTGGTTGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTGACCGGTCTCTGGTGGTGCTGAAGGAGCCGAGGTCTGCGGGATCGGTGTTGGATGTGGAGTTTAATGATTGTGCTTTCTGGGTGCAGATTCATAATGTCCC
TATGCGTTGGCAGACAAGGGAGATGGCTCGACAGTTGGGAGAGAAGATCGGAACTGTGGAGGAAGTTGGTGGATCGCAGGGAGGTGACTGGACAGGGCCGATTCTTCGAA
TAAGGGTCCTTTTGAGGTTGGATCGCCCACTCAGGAGGGGATTCCAATTGCAGGATGAGGAGGGCAGGGAGTTTCGGTGTCCGGTCTTGTATGAGCGATTACCAGATTTT
TGTTACGACTGTGGCTGCCTGGGGCACTCGAGGAGGGAGTGTGGGGTGATTAGGGAAGGTAATCTGGAACAGCAGGGCGAACAGTATGGTGATTGGCTGAGAGCAGGGGC
AGGGCTTGGGGAGTCTGGAAGGCGCACTCAGGAGGGAGGGGTGGATAATGCAGCGATTCGGAGACCTGAGATCCCAAAGCCCCCTACTGAGGGACAGGTGACTCAGGATT
CTGTTCCTGAGAAAGCAGGGAAGGAGTTGCTAGTGCGTCAGGGGAGGGTGTGGGAGTGCAGGTTAGTGAGCAGGGAGGTCAGGGGGAAGGGGGTAGTGGAGAGGGGGATA
GCGTGGTTGTGGTAG
Protein sequenceShow/hide protein sequence
MGFDRSLVVLKEPRSAGSVLDVEFNDCAFWVQIHNVPMRWQTREMARQLGEKIGTVEEVGGSQGGDWTGPILRIRVLLRLDRPLRRGFQLQDEEGREFRCPVLYERLPDF
CYDCGCLGHSRRECGVIREGNLEQQGEQYGDWLRAGAGLGESGRRTQEGGVDNAAIRRPEIPKPPTEGQVTQDSVPEKAGKELLVRQGRVWECRLVSREVRGKGVVERGI
AWLW