; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002332 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002332
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPSII 6.1 kDa protein
Genome locationchr4:41804105..41805057
RNA-Seq ExpressionLag0002332
SyntenyLag0002332
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059706.1 photosystem II reaction center W protein [Cucumis melo var. makuwa]1.5e-6094.93Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNL MGASLIAAACAATMS+PAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

KAG6575946.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.7e-5990.51Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VR+SLVQNRPLPAASPAPFLLGLP+LGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_004146953.1 photosystem II reaction center W protein, chloroplastic isoform X2 [Cucumis sativus]1.5e-6094.16Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_008451280.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like [Cucumis melo]1.7e-6195.65Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

XP_038900227.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]1.6e-6295.62Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAVTSAA A  RTSLVQNRPLPAASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0K4V6 PSII 6.1 kDa protein7.1e-6194.16Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VRTSLVQNR LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVF LIWAFYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A1S3BQI5 PSII 6.1 kDa protein8.3e-6295.65Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A5D3DRC0 PSII 6.1 kDa protein7.1e-6194.93Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG
        MAAVTSAAAAAVRTSLVQNRP LP+ASPAPFLLGLP+LGKKGGVRCSMEGK NGEVENKSSNL MGASLIAAACAATMS+PAMALVDERLSTEGTGLPFG
Subjt:  MAAVTSAAAAAVRTSLVQNRP-LPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFG

Query:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        LSNNLLGWIL GVFGLIWAFYIVYTSTLEEDEESGLSL
Subjt:  LSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1GQI7 PSII 6.1 kDa protein5.1e-5989.78Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAVTSAAAA VR+SLVQNRPLPAASP+PFLLGLP+LGKKGGVRCSMEGK NG+VENKSS LGMGASL+AAA AA+MS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IWAFYI+YTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

A0A6J1H5C6 PSII 6.1 kDa protein9.5e-5888.32Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL
        MAAV SA+AAAVR+SLVQNRPLPAASP  FLLGLP+LGK+GGVRC ++GK NGEVENKS NLGMGASLIAAACAATMS+PAMALVDERLSTEGTGLPFGL
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGL

Query:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        SNNLLGWIL GVFG IW FYIVYTSTLEEDEESGLSL
Subjt:  SNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.2e-3362.41Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSNPAMALVDERLSTEGTGL
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MSNPAMALVDER+STEGTGL
Subjt:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSNPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic3.1e-3763.31Show/hide
Query:  MAAVTSAAAAAV--RTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPF
        MA +T++++A++  R SLV N  +  +S    +LGLPS+ K+  V CS+E K +      ++N  MGASL+AAA AAT+SNPAMALVDER+STEGTGLPF
Subjt:  MAAVTSAAAAAV--RTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        GLSNNLLGWILFGVFGLIWA Y VY S LEEDEESGLSL
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic6.2e-2251.47Show/hide
Query:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGG--VRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPF
        MA V++AAA +V    V   P          LGLP +  +    VRC+   +        ++  G GASL+A A  A    PAMALVDER+STEGTGL  
Subjt:  MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGG--VRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPF

Query:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESG
        GLSNNLLGWIL GVFGLIW+ Y +YTS LEEDEESG
Subjt:  GLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.5e-1040Show/hide
Query:  SNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLE--EDEESGLSL
        S +    ++++   A   ++PA ALVDER++ +GTG PFG+++ +LGW+L GVFG +WA + +    L   ED + GL L
Subjt:  SNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWAFYIVYTSTLE--EDEESGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W8.6e-3562.41Show/hide
Query:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSNPAMALVDERLSTEGTGL
        MA+ T++A+  +A R +L+    +  ++P   +LGLP +G KKGGVRCSME K     +   S +G G S  A AA  A MSNPAMALVDER+STEGTGL
Subjt:  MAAVTSAAA--AAVRTSLVQNRPLPAASPAPFLLGLPSLG-KKGGVRCSMEGKTNGEVENKSSNLGMGASLIA-AACAATMSNPAMALVDERLSTEGTGL

Query:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL
        PFGLSNNLLGWILFGVFGLIW F+ VYTS+LEEDEESGLSL
Subjt:  PFGLSNNLLGWILFGVFGLIWAFYIVYTSTLEEDEESGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCCGCCGTGCGCACTTCTCTGGTCCAGAACCGCCCCCTTCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTT
GGGGAAGAAAGGAGGAGTGAGGTGTTCTATGGAAGGAAAGACAAATGGAGAAGTAGAAAACAAGTCGAGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCGGCGTGTG
CTGCGACGATGTCGAACCCAGCCATGGCTTTGGTGGATGAGAGATTGAGCACCGAAGGGACTGGACTTCCATTCGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTT
GGGGTTTTTGGTCTCATATGGGCATTCTACATCGTTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGTCACCTCCGCCGCCGCCGCCGCCGTGCGCACTTCTCTGGTCCAGAACCGCCCCCTTCCGGCGGCTTCACCCGCCCCATTCCTTCTTGGGTTGCCTTCTTT
GGGGAAGAAAGGAGGAGTGAGGTGTTCTATGGAAGGAAAGACAAATGGAGAAGTAGAAAACAAGTCGAGCAACTTGGGGATGGGCGCGTCGTTGATAGCTGCGGCGTGTG
CTGCGACGATGTCGAACCCAGCCATGGCTTTGGTGGATGAGAGATTGAGCACCGAAGGGACTGGACTTCCATTCGGTTTGAGCAACAATCTTCTTGGTTGGATTCTCTTT
GGGGTTTTTGGTCTCATATGGGCATTCTACATCGTTTACACTTCTACTCTTGAAGAGGATGAGGAATCAGGCTTATCTCTTTAA
Protein sequenceShow/hide protein sequence
MAAVTSAAAAAVRTSLVQNRPLPAASPAPFLLGLPSLGKKGGVRCSMEGKTNGEVENKSSNLGMGASLIAAACAATMSNPAMALVDERLSTEGTGLPFGLSNNLLGWILF
GVFGLIWAFYIVYTSTLEEDEESGLSL